miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17097 5' -55 NC_004333.2 + 43612 0.66 0.72173
Target:  5'- gCGAUCaGGCGC-GGUCa-UCGUCGa -3'
miRNA:   3'- gGCUGGaCCGCGaCCAGaaAGCAGUg -5'
17097 5' -55 NC_004333.2 + 26823 0.67 0.652916
Target:  5'- cCCGGCCUGcagcgucguagcgaGUGCU-GUCg--CGUCGCg -3'
miRNA:   3'- -GGCUGGAC--------------CGCGAcCAGaaaGCAGUG- -5'
17097 5' -55 NC_004333.2 + 37567 0.67 0.645173
Target:  5'- gCCGAC---GCGUUGGUCUaccagcCGUCACg -3'
miRNA:   3'- -GGCUGgacCGCGACCAGAaa----GCAGUG- -5'
17097 5' -55 NC_004333.2 + 1281 0.67 0.645173
Target:  5'- gCCG-CCUGGCGC-GcGUUg--CGUUACg -3'
miRNA:   3'- -GGCuGGACCGCGaC-CAGaaaGCAGUG- -5'
17097 5' -55 NC_004333.2 + 15141 0.67 0.634101
Target:  5'- aUCGACUUGGCGUcGGUUga--GUUGCg -3'
miRNA:   3'- -GGCUGGACCGCGaCCAGaaagCAGUG- -5'
17097 5' -55 NC_004333.2 + 45016 0.67 0.621921
Target:  5'- uCCGGCCgcucgaccgcgcgUGGCGCUGG-Cgg-CG-CGCa -3'
miRNA:   3'- -GGCUGG-------------ACCGCGACCaGaaaGCaGUG- -5'
17097 5' -55 NC_004333.2 + 32195 0.68 0.611963
Target:  5'- aCGugCUGGCGCUuaucGcGUCggaacugcCGUCACu -3'
miRNA:   3'- gGCugGACCGCGA----C-CAGaaa-----GCAGUG- -5'
17097 5' -55 NC_004333.2 + 18669 0.68 0.589895
Target:  5'- cCCGcGCCUGccGCGCcGGUCgUUUGUUGCa -3'
miRNA:   3'- -GGC-UGGAC--CGCGaCCAGaAAGCAGUG- -5'
17097 5' -55 NC_004333.2 + 19277 0.68 0.567971
Target:  5'- gCGACCUGGUGCUGcUCg--CGagcaagCACa -3'
miRNA:   3'- gGCUGGACCGCGACcAGaaaGCa-----GUG- -5'
17097 5' -55 NC_004333.2 + 29780 0.68 0.557084
Target:  5'- aUGAgCUGGCGCgGGUCgUUCGcgacgacggUCACc -3'
miRNA:   3'- gGCUgGACCGCGaCCAGaAAGC---------AGUG- -5'
17097 5' -55 NC_004333.2 + 26454 0.7 0.497439
Target:  5'- gCCGACCUGGcCGCcuugUGGaUCgucgugaaugugCGUCGCg -3'
miRNA:   3'- -GGCUGGACC-GCG----ACC-AGaaa---------GCAGUG- -5'
17097 5' -55 NC_004333.2 + 30667 0.7 0.493284
Target:  5'- uCCGGCCUGGgGUUucucggcgaagcGGUCga-UGUCGCg -3'
miRNA:   3'- -GGCUGGACCgCGA------------CCAGaaaGCAGUG- -5'
17097 5' -55 NC_004333.2 + 4666 0.7 0.462648
Target:  5'- -aGGCC-GGCGCgcgGGUCUUUCuUCAg -3'
miRNA:   3'- ggCUGGaCCGCGa--CCAGAAAGcAGUg -5'
17097 5' -55 NC_004333.2 + 27508 0.7 0.452659
Target:  5'- cCCGAa-UGGCGcCUGGUCgacagcCGUCGCc -3'
miRNA:   3'- -GGCUggACCGC-GACCAGaaa---GCAGUG- -5'
17097 5' -55 NC_004333.2 + 23340 0.72 0.368497
Target:  5'- gCCGACCUGGCucaaagGCUGGaCg---GUCACg -3'
miRNA:   3'- -GGCUGGACCG------CGACCaGaaagCAGUG- -5'
17097 5' -55 NC_004333.2 + 2759 0.73 0.303215
Target:  5'- gCGGCCgccGUGCcGGUCgcgUUCGUCACg -3'
miRNA:   3'- gGCUGGac-CGCGaCCAGa--AAGCAGUG- -5'
17097 5' -55 NC_004333.2 + 45449 1.12 0.000593
Target:  5'- gCCGACCUGGCGCUGGUCUUUCGUCACg -3'
miRNA:   3'- -GGCUGGACCGCGACCAGAAAGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.