miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 11682 0.66 0.675356
Target:  5'- cGCGAagugaCGGCCGGCGcguuUCAgGAUUUg- -3'
miRNA:   3'- aCGCUg----GCUGGCCGU----AGUgCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 4125 0.66 0.675356
Target:  5'- cGCGG-CGGCUGGUgguauAUCACGcaguuUCUCGa -3'
miRNA:   3'- aCGCUgGCUGGCCG-----UAGUGCu----AGAGC- -5'
17098 3' -56.1 NC_004333.2 + 2565 0.66 0.675356
Target:  5'- aUGCGAgaCGAUCGGCAaUCACGGccgUCcaggCGg -3'
miRNA:   3'- -ACGCUg-GCUGGCCGU-AGUGCU---AGa---GC- -5'
17098 3' -56.1 NC_004333.2 + 14244 0.66 0.664467
Target:  5'- cGaCGAgCGAcCCGGCAUCGggcCGGUCgUCa -3'
miRNA:   3'- aC-GCUgGCU-GGCCGUAGU---GCUAG-AGc -5'
17098 3' -56.1 NC_004333.2 + 37572 0.66 0.664467
Target:  5'- cGUGGCCGugGCCGGCGgcccauugCuCGAUCUg- -3'
miRNA:   3'- aCGCUGGC--UGGCCGUa-------GuGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 15064 0.66 0.664467
Target:  5'- gGCGGCCcgcuaACCGGCuUCuCGAUCgacgUCGg -3'
miRNA:   3'- aCGCUGGc----UGGCCGuAGuGCUAG----AGC- -5'
17098 3' -56.1 NC_004333.2 + 32403 0.66 0.664467
Target:  5'- aGCGAC---CCGGCAgccgugCACGcgCUCGu -3'
miRNA:   3'- aCGCUGgcuGGCCGUa-----GUGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 5541 0.66 0.65464
Target:  5'- cGUGGCCGGCgaCGGCuuggCGCGAgugcagaccguucagCUCGa -3'
miRNA:   3'- aCGCUGGCUG--GCCGua--GUGCUa--------------GAGC- -5'
17098 3' -56.1 NC_004333.2 + 24320 0.66 0.653547
Target:  5'- cGCGACCGACCGaGaaugCGCccccaGAUgUCGa -3'
miRNA:   3'- aCGCUGGCUGGC-Cgua-GUG-----CUAgAGC- -5'
17098 3' -56.1 NC_004333.2 + 36162 0.66 0.652454
Target:  5'- cGUGGCUGGCgCGcagcgccGCGUCACGGgccagCUCGu -3'
miRNA:   3'- aCGCUGGCUG-GC-------CGUAGUGCUa----GAGC- -5'
17098 3' -56.1 NC_004333.2 + 2758 0.66 0.652454
Target:  5'- cGCGGCCGccguGCCGGUcgcguucGUCACGAcCgugaagCGg -3'
miRNA:   3'- aCGCUGGC----UGGCCG-------UAGUGCUaGa-----GC- -5'
17098 3' -56.1 NC_004333.2 + 43358 0.66 0.650267
Target:  5'- aGCGcauaGCCGGCCGGgAUCgGCGccccuugcgcccccGUCUCa -3'
miRNA:   3'- aCGC----UGGCUGGCCgUAG-UGC--------------UAGAGc -5'
17098 3' -56.1 NC_004333.2 + 28723 0.66 0.642608
Target:  5'- cUGCGACCGcgauCCGGCGacUUggGcgCUCa -3'
miRNA:   3'- -ACGCUGGCu---GGCCGU--AGugCuaGAGc -5'
17098 3' -56.1 NC_004333.2 + 19637 0.66 0.642608
Target:  5'- cGCGGCCGacGCUGGCcGUCAacagCUCGc -3'
miRNA:   3'- aCGCUGGC--UGGCCG-UAGUgcuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 4513 0.66 0.642608
Target:  5'- aGCGAgUGGCCGGCAgacaacaaCGCGGaCUgGg -3'
miRNA:   3'- aCGCUgGCUGGCCGUa-------GUGCUaGAgC- -5'
17098 3' -56.1 NC_004333.2 + 47318 0.66 0.642608
Target:  5'- aGCGGCUGACUGuGCu--GCGAUgCUCa -3'
miRNA:   3'- aCGCUGGCUGGC-CGuagUGCUA-GAGc -5'
17098 3' -56.1 NC_004333.2 + 24491 0.66 0.641514
Target:  5'- gUGCGGCCGAgauagUCGGuCAUuucagcaucacacCGCGAUCUgCGa -3'
miRNA:   3'- -ACGCUGGCU-----GGCC-GUA-------------GUGCUAGA-GC- -5'
17098 3' -56.1 NC_004333.2 + 3272 0.66 0.631659
Target:  5'- gGCGcGCCgGGCCGGC-UCACcGGcCUCGu -3'
miRNA:   3'- aCGC-UGG-CUGGCCGuAGUG-CUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 46185 0.66 0.631659
Target:  5'- gGCGACCGAg-GGCugggCGCG-UCUCGc -3'
miRNA:   3'- aCGCUGGCUggCCGua--GUGCuAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 12691 0.66 0.631659
Target:  5'- aGCGACa-ACUGGauCAUCACGAUCacaUCGu -3'
miRNA:   3'- aCGCUGgcUGGCC--GUAGUGCUAG---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.