Results 21 - 40 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17098 | 3' | -56.1 | NC_004333.2 | + | 15064 | 0.66 | 0.664467 |
Target: 5'- gGCGGCCcgcuaACCGGCuUCuCGAUCgacgUCGg -3' miRNA: 3'- aCGCUGGc----UGGCCGuAGuGCUAG----AGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 17288 | 0.67 | 0.620712 |
Target: 5'- cGUGaacGCCGGCCGGCGcaGCGucCUCGa -3' miRNA: 3'- aCGC---UGGCUGGCCGUagUGCuaGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 10674 | 0.67 | 0.577109 |
Target: 5'- cGCG-CCGGCCGGUG-CACGcuaugcaCUCGg -3' miRNA: 3'- aCGCuGGCUGGCCGUaGUGCua-----GAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 4656 | 0.67 | 0.5663 |
Target: 5'- gGCGACgggcaGGCCGGCG-CGCgGGUCUUu -3' miRNA: 3'- aCGCUGg----CUGGCCGUaGUG-CUAGAGc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 43440 | 0.67 | 0.5663 |
Target: 5'- gGCuGACgGACgCGcGCAUCGCGcgCUUGc -3' miRNA: 3'- aCG-CUGgCUG-GC-CGUAGUGCuaGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 31235 | 0.67 | 0.620712 |
Target: 5'- cGCGA-CGGCCGcGCGgcgcagCGCcGUCUCGg -3' miRNA: 3'- aCGCUgGCUGGC-CGUa-----GUGcUAGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 9596 | 0.67 | 0.598854 |
Target: 5'- aGCGccaGCCGGCgCGGCAUCGgcCGGUUgCGc -3' miRNA: 3'- aCGC---UGGCUG-GCCGUAGU--GCUAGaGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 18600 | 0.67 | 0.598854 |
Target: 5'- -aCGACCGGCgCGGCAggCGCGGg--CGg -3' miRNA: 3'- acGCUGGCUG-GCCGUa-GUGCUagaGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 20315 | 0.67 | 0.620712 |
Target: 5'- gUGCGGCgCGAUguaGGCcaGUCGCGGUCgaUCGc -3' miRNA: 3'- -ACGCUG-GCUGg--CCG--UAGUGCUAG--AGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 29116 | 0.67 | 0.620712 |
Target: 5'- cGCGAUCG-UgGGCggCGCGGUgCUCGc -3' miRNA: 3'- aCGCUGGCuGgCCGuaGUGCUA-GAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 30742 | 0.67 | 0.620712 |
Target: 5'- gGCGGCgCGAaCGGCuUCAUGAaggugCUCGa -3' miRNA: 3'- aCGCUG-GCUgGCCGuAGUGCUa----GAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 36058 | 0.67 | 0.620712 |
Target: 5'- gGCGACCGcgaACCaGGUcgcgagCACGGUgCUCGa -3' miRNA: 3'- aCGCUGGC---UGG-CCGua----GUGCUA-GAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 33087 | 0.67 | 0.617429 |
Target: 5'- aGCGAUCGACgccgaucccgauagCGGUAUCGcCGGaCUCGc -3' miRNA: 3'- aCGCUGGCUG--------------GCCGUAGU-GCUaGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 17683 | 0.67 | 0.598854 |
Target: 5'- --gGGCgCGGCCGGCGUCuugacaACGAUCgauugCGa -3' miRNA: 3'- acgCUG-GCUGGCCGUAG------UGCUAGa----GC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 23272 | 0.67 | 0.598854 |
Target: 5'- gGCGGCgGguACgGGUAUCACGAUUcCGc -3' miRNA: 3'- aCGCUGgC--UGgCCGUAGUGCUAGaGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 30030 | 0.67 | 0.587963 |
Target: 5'- cGCGGCCGcGCuCGGCAcgcgcuuuUCGCGcauUUUCGa -3' miRNA: 3'- aCGCUGGC-UG-GCCGU--------AGUGCu--AGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 19823 | 0.67 | 0.577109 |
Target: 5'- aGCGGCCGAUcgcgucguugaCGGCAgcggCGCcGUCUUGc -3' miRNA: 3'- aCGCUGGCUG-----------GCCGUa---GUGcUAGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 38466 | 0.67 | 0.577109 |
Target: 5'- -uUGACCGugGCCGGCGUCACGccggCGc -3' miRNA: 3'- acGCUGGC--UGGCCGUAGUGCuagaGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 2719 | 0.67 | 0.5663 |
Target: 5'- uUGCGGCUGauacGCCGGCAagCGCGAUg--- -3' miRNA: 3'- -ACGCUGGC----UGGCCGUa-GUGCUAgagc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 17582 | 0.67 | 0.5663 |
Target: 5'- gUGCGACCGGCUGcaGCAggucggUGCGGUCgagugCGa -3' miRNA: 3'- -ACGCUGGCUGGC--CGUa-----GUGCUAGa----GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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