Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17098 | 3' | -56.1 | NC_004333.2 | + | 45673 | 1.08 | 0.000943 |
Target: 5'- uUGCGACCGACCGGCAUCACGAUCUCGc -3' miRNA: 3'- -ACGCUGGCUGGCCGUAGUGCUAGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 2826 | 0.89 | 0.023206 |
Target: 5'- cGCGACCGGCaCGGCGgcCGCGAUCUCGg -3' miRNA: 3'- aCGCUGGCUG-GCCGUa-GUGCUAGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 38171 | 0.8 | 0.090473 |
Target: 5'- gUGCGACCagauGCCGgguaagccguucaGCAUCACGAUCUCGg -3' miRNA: 3'- -ACGCUGGc---UGGC-------------CGUAGUGCUAGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 8996 | 0.78 | 0.130687 |
Target: 5'- gGCGACCGACgCGGCGUuCGCGG-CUUGc -3' miRNA: 3'- aCGCUGGCUG-GCCGUA-GUGCUaGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 41010 | 0.78 | 0.134358 |
Target: 5'- gUGCGACCGACUguGGCGUCGCGAa---- -3' miRNA: 3'- -ACGCUGGCUGG--CCGUAGUGCUagagc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 44584 | 0.77 | 0.160175 |
Target: 5'- gGUGAUCGGCCGGCGUCcaguccggguucgcuGCGAUUUCc -3' miRNA: 3'- aCGCUGGCUGGCCGUAG---------------UGCUAGAGc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 8780 | 0.75 | 0.224304 |
Target: 5'- cGCgGACuCGAgCGGCGUCACGGUCg-- -3' miRNA: 3'- aCG-CUG-GCUgGCCGUAGUGCUAGagc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 30339 | 0.75 | 0.212274 |
Target: 5'- cGCGGCCGcACCGGCAgacaguuUCACGcggUUCGg -3' miRNA: 3'- aCGCUGGC-UGGCCGU-------AGUGCua-GAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 44201 | 0.73 | 0.268628 |
Target: 5'- aGCGGCCGAguCCGGCcucgGUCAgauCGGUCUUGc -3' miRNA: 3'- aCGCUGGCU--GGCCG----UAGU---GCUAGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 31410 | 0.73 | 0.296992 |
Target: 5'- aGCGgucugaugaaGCUGGCCGGCAUUGCGGgcgccgugCUCGg -3' miRNA: 3'- aCGC----------UGGCUGGCCGUAGUGCUa-------GAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 10211 | 0.73 | 0.275508 |
Target: 5'- aUGCGGCCG-UCGGCAUCaaagcugcgcGCGGUCUg- -3' miRNA: 3'- -ACGCUGGCuGGCCGUAG----------UGCUAGAgc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 25728 | 0.72 | 0.335642 |
Target: 5'- cGCGA-CGGCCGGCAagACGcUUUCGa -3' miRNA: 3'- aCGCUgGCUGGCCGUagUGCuAGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 17355 | 0.72 | 0.335642 |
Target: 5'- cUGCG-CCGGCCGGCGuUCACG-UCg-- -3' miRNA: 3'- -ACGCuGGCUGGCCGU-AGUGCuAGagc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 14493 | 0.72 | 0.335642 |
Target: 5'- gGCuGAUCGACUGGCggCGCGAgaaaCUCGc -3' miRNA: 3'- aCG-CUGGCUGGCCGuaGUGCUa---GAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 39131 | 0.72 | 0.327627 |
Target: 5'- cGCGACgGcAUCGGCuugccgAUCAcCGAUCUCGa -3' miRNA: 3'- aCGCUGgC-UGGCCG------UAGU-GCUAGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 2460 | 0.72 | 0.3438 |
Target: 5'- gGCGACCG-CCGGCgccGUCAUGggCUaCGc -3' miRNA: 3'- aCGCUGGCuGGCCG---UAGUGCuaGA-GC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 3373 | 0.72 | 0.311259 |
Target: 5'- aGCGGaacaaugUCGACCGGCGUCGCcGUCgUCGc -3' miRNA: 3'- aCGCU-------GGCUGGCCGUAGUGcUAG-AGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 24663 | 0.71 | 0.386695 |
Target: 5'- aGCGcaaauCCGACCGGCGagucgaUCACGAUgggcaUCGa -3' miRNA: 3'- aCGCu----GGCUGGCCGU------AGUGCUAg----AGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 13827 | 0.71 | 0.369119 |
Target: 5'- cGCGAgCGGCgcgCGGCGUCcuACGcgCUCGa -3' miRNA: 3'- aCGCUgGCUG---GCCGUAG--UGCuaGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 2701 | 0.71 | 0.352099 |
Target: 5'- gGCGGCCGACaGGC----CGAUCUCGu -3' miRNA: 3'- aCGCUGGCUGgCCGuaguGCUAGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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