miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 45673 1.08 0.000943
Target:  5'- uUGCGACCGACCGGCAUCACGAUCUCGc -3'
miRNA:   3'- -ACGCUGGCUGGCCGUAGUGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 2826 0.89 0.023206
Target:  5'- cGCGACCGGCaCGGCGgcCGCGAUCUCGg -3'
miRNA:   3'- aCGCUGGCUG-GCCGUa-GUGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 38171 0.8 0.090473
Target:  5'- gUGCGACCagauGCCGgguaagccguucaGCAUCACGAUCUCGg -3'
miRNA:   3'- -ACGCUGGc---UGGC-------------CGUAGUGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 8996 0.78 0.130687
Target:  5'- gGCGACCGACgCGGCGUuCGCGG-CUUGc -3'
miRNA:   3'- aCGCUGGCUG-GCCGUA-GUGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 41010 0.78 0.134358
Target:  5'- gUGCGACCGACUguGGCGUCGCGAa---- -3'
miRNA:   3'- -ACGCUGGCUGG--CCGUAGUGCUagagc -5'
17098 3' -56.1 NC_004333.2 + 44584 0.77 0.160175
Target:  5'- gGUGAUCGGCCGGCGUCcaguccggguucgcuGCGAUUUCc -3'
miRNA:   3'- aCGCUGGCUGGCCGUAG---------------UGCUAGAGc -5'
17098 3' -56.1 NC_004333.2 + 30339 0.75 0.212274
Target:  5'- cGCGGCCGcACCGGCAgacaguuUCACGcggUUCGg -3'
miRNA:   3'- aCGCUGGC-UGGCCGU-------AGUGCua-GAGC- -5'
17098 3' -56.1 NC_004333.2 + 8780 0.75 0.224304
Target:  5'- cGCgGACuCGAgCGGCGUCACGGUCg-- -3'
miRNA:   3'- aCG-CUG-GCUgGCCGUAGUGCUAGagc -5'
17098 3' -56.1 NC_004333.2 + 44201 0.73 0.268628
Target:  5'- aGCGGCCGAguCCGGCcucgGUCAgauCGGUCUUGc -3'
miRNA:   3'- aCGCUGGCU--GGCCG----UAGU---GCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 10211 0.73 0.275508
Target:  5'- aUGCGGCCG-UCGGCAUCaaagcugcgcGCGGUCUg- -3'
miRNA:   3'- -ACGCUGGCuGGCCGUAG----------UGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 31410 0.73 0.296992
Target:  5'- aGCGgucugaugaaGCUGGCCGGCAUUGCGGgcgccgugCUCGg -3'
miRNA:   3'- aCGC----------UGGCUGGCCGUAGUGCUa-------GAGC- -5'
17098 3' -56.1 NC_004333.2 + 3373 0.72 0.311259
Target:  5'- aGCGGaacaaugUCGACCGGCGUCGCcGUCgUCGc -3'
miRNA:   3'- aCGCU-------GGCUGGCCGUAGUGcUAG-AGC- -5'
17098 3' -56.1 NC_004333.2 + 39131 0.72 0.327627
Target:  5'- cGCGACgGcAUCGGCuugccgAUCAcCGAUCUCGa -3'
miRNA:   3'- aCGCUGgC-UGGCCG------UAGU-GCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 14493 0.72 0.335642
Target:  5'- gGCuGAUCGACUGGCggCGCGAgaaaCUCGc -3'
miRNA:   3'- aCG-CUGGCUGGCCGuaGUGCUa---GAGC- -5'
17098 3' -56.1 NC_004333.2 + 25728 0.72 0.335642
Target:  5'- cGCGA-CGGCCGGCAagACGcUUUCGa -3'
miRNA:   3'- aCGCUgGCUGGCCGUagUGCuAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 17355 0.72 0.335642
Target:  5'- cUGCG-CCGGCCGGCGuUCACG-UCg-- -3'
miRNA:   3'- -ACGCuGGCUGGCCGU-AGUGCuAGagc -5'
17098 3' -56.1 NC_004333.2 + 2460 0.72 0.3438
Target:  5'- gGCGACCG-CCGGCgccGUCAUGggCUaCGc -3'
miRNA:   3'- aCGCUGGCuGGCCG---UAGUGCuaGA-GC- -5'
17098 3' -56.1 NC_004333.2 + 13368 0.71 0.352099
Target:  5'- cGCGGCaCGAgCGGCGUgucCAUGAUCUgGu -3'
miRNA:   3'- aCGCUG-GCUgGCCGUA---GUGCUAGAgC- -5'
17098 3' -56.1 NC_004333.2 + 2701 0.71 0.352099
Target:  5'- gGCGGCCGACaGGC----CGAUCUCGu -3'
miRNA:   3'- aCGCUGGCUGgCCGuaguGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 38141 0.71 0.360539
Target:  5'- cGCGuucgacGCCGAcCCGGCcgC-CGAUCUUGg -3'
miRNA:   3'- aCGC------UGGCU-GGCCGuaGuGCUAGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.