miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 13827 0.71 0.369119
Target:  5'- cGCGAgCGGCgcgCGGCGUCcuACGcgCUCGa -3'
miRNA:   3'- aCGCUgGCUG---GCCGUAG--UGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 3522 0.71 0.386695
Target:  5'- cUGCGGCUGAUCGGCGUaaaGCGGgaUCa -3'
miRNA:   3'- -ACGCUGGCUGGCCGUAg--UGCUagAGc -5'
17098 3' -56.1 NC_004333.2 + 40230 0.71 0.386695
Target:  5'- cGCGACgCGGCCGGCcaaccgAUCgACGAaUUCGa -3'
miRNA:   3'- aCGCUG-GCUGGCCG------UAG-UGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 24663 0.71 0.386695
Target:  5'- aGCGcaaauCCGACCGGCGagucgaUCACGAUgggcaUCGa -3'
miRNA:   3'- aCGCu----GGCUGGCCGU------AGUGCUAg----AGC- -5'
17098 3' -56.1 NC_004333.2 + 3780 0.7 0.395688
Target:  5'- gGCGuuCUGAUCGGCcuUCGCGAUCUgCGc -3'
miRNA:   3'- aCGCu-GGCUGGCCGu-AGUGCUAGA-GC- -5'
17098 3' -56.1 NC_004333.2 + 27808 0.7 0.404814
Target:  5'- gGCGGCCGACCagauucGCGcCGCGAUCgCGc -3'
miRNA:   3'- aCGCUGGCUGGc-----CGUaGUGCUAGaGC- -5'
17098 3' -56.1 NC_004333.2 + 39260 0.7 0.423458
Target:  5'- aGCGGCCGGCaGGCG-CACGcgCgcgCGa -3'
miRNA:   3'- aCGCUGGCUGgCCGUaGUGCuaGa--GC- -5'
17098 3' -56.1 NC_004333.2 + 33361 0.7 0.432971
Target:  5'- aUGCGGCCGAC--GCAacgCGCGcgCUCGg -3'
miRNA:   3'- -ACGCUGGCUGgcCGUa--GUGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 41292 0.7 0.442608
Target:  5'- gGCGACaCGACCGGCGaCAgGuagccCUCGc -3'
miRNA:   3'- aCGCUG-GCUGGCCGUaGUgCua---GAGC- -5'
17098 3' -56.1 NC_004333.2 + 38759 0.7 0.442608
Target:  5'- aGCGGCCacGAgCGGCAUCGcCGAgCUUGc -3'
miRNA:   3'- aCGCUGG--CUgGCCGUAGU-GCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 44330 0.7 0.442608
Target:  5'- cUGCGGCgGcaACaCGGCuAUCACGAUCUg- -3'
miRNA:   3'- -ACGCUGgC--UG-GCCG-UAGUGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 20576 0.69 0.462237
Target:  5'- cGCGGCggCGGCCGGCA--GCGGUUgcgCGg -3'
miRNA:   3'- aCGCUG--GCUGGCCGUagUGCUAGa--GC- -5'
17098 3' -56.1 NC_004333.2 + 44974 0.69 0.472222
Target:  5'- gGCGGCCGACUGcaGCAccaUACGAUCUa- -3'
miRNA:   3'- aCGCUGGCUGGC--CGUa--GUGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 15761 0.69 0.472222
Target:  5'- aGCGACCGaACCGucGCGacuUCAgcaggucgugauCGAUCUCGa -3'
miRNA:   3'- aCGCUGGC-UGGC--CGU---AGU------------GCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 30461 0.69 0.482314
Target:  5'- gGCG-CCGGucgcuucgacguUCGGCAUCGCGGUCg-- -3'
miRNA:   3'- aCGCuGGCU------------GGCCGUAGUGCUAGagc -5'
17098 3' -56.1 NC_004333.2 + 30632 0.68 0.513191
Target:  5'- cGCGGuguUCGGCUGGCAgacgaUCGCGAaggcgCUCGa -3'
miRNA:   3'- aCGCU---GGCUGGCCGU-----AGUGCUa----GAGC- -5'
17098 3' -56.1 NC_004333.2 + 37373 0.68 0.513191
Target:  5'- cGCGACCGACUGgaacGCGUCGCc--UUCGa -3'
miRNA:   3'- aCGCUGGCUGGC----CGUAGUGcuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 17573 0.68 0.513191
Target:  5'- cGaCGACCuGAUCGGCAagucgCGCGA-CUCGc -3'
miRNA:   3'- aC-GCUGG-CUGGCCGUa----GUGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 3933 0.68 0.513191
Target:  5'- gGCaGGCCGACCGGCAggUugGcgC-CGu -3'
miRNA:   3'- aCG-CUGGCUGGCCGUa-GugCuaGaGC- -5'
17098 3' -56.1 NC_004333.2 + 28967 0.68 0.513191
Target:  5'- aUGCG-CCGGCCuGCGccgagCGCGAUCgcgCGg -3'
miRNA:   3'- -ACGCuGGCUGGcCGUa----GUGCUAGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.