Results 1 - 20 of 87 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17098 | 3' | -56.1 | NC_004333.2 | + | 11682 | 0.66 | 0.675356 |
Target: 5'- cGCGAagugaCGGCCGGCGcguuUCAgGAUUUg- -3' miRNA: 3'- aCGCUg----GCUGGCCGU----AGUgCUAGAgc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 4125 | 0.66 | 0.675356 |
Target: 5'- cGCGG-CGGCUGGUgguauAUCACGcaguuUCUCGa -3' miRNA: 3'- aCGCUgGCUGGCCG-----UAGUGCu----AGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 2565 | 0.66 | 0.675356 |
Target: 5'- aUGCGAgaCGAUCGGCAaUCACGGccgUCcaggCGg -3' miRNA: 3'- -ACGCUg-GCUGGCCGU-AGUGCU---AGa---GC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 14244 | 0.66 | 0.664467 |
Target: 5'- cGaCGAgCGAcCCGGCAUCGggcCGGUCgUCa -3' miRNA: 3'- aC-GCUgGCU-GGCCGUAGU---GCUAG-AGc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 37572 | 0.66 | 0.664467 |
Target: 5'- cGUGGCCGugGCCGGCGgcccauugCuCGAUCUg- -3' miRNA: 3'- aCGCUGGC--UGGCCGUa-------GuGCUAGAgc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 15064 | 0.66 | 0.664467 |
Target: 5'- gGCGGCCcgcuaACCGGCuUCuCGAUCgacgUCGg -3' miRNA: 3'- aCGCUGGc----UGGCCGuAGuGCUAG----AGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 32403 | 0.66 | 0.664467 |
Target: 5'- aGCGAC---CCGGCAgccgugCACGcgCUCGu -3' miRNA: 3'- aCGCUGgcuGGCCGUa-----GUGCuaGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 5541 | 0.66 | 0.65464 |
Target: 5'- cGUGGCCGGCgaCGGCuuggCGCGAgugcagaccguucagCUCGa -3' miRNA: 3'- aCGCUGGCUG--GCCGua--GUGCUa--------------GAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 24320 | 0.66 | 0.653547 |
Target: 5'- cGCGACCGACCGaGaaugCGCccccaGAUgUCGa -3' miRNA: 3'- aCGCUGGCUGGC-Cgua-GUG-----CUAgAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 36162 | 0.66 | 0.652454 |
Target: 5'- cGUGGCUGGCgCGcagcgccGCGUCACGGgccagCUCGu -3' miRNA: 3'- aCGCUGGCUG-GC-------CGUAGUGCUa----GAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 2758 | 0.66 | 0.652454 |
Target: 5'- cGCGGCCGccguGCCGGUcgcguucGUCACGAcCgugaagCGg -3' miRNA: 3'- aCGCUGGC----UGGCCG-------UAGUGCUaGa-----GC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 43358 | 0.66 | 0.650267 |
Target: 5'- aGCGcauaGCCGGCCGGgAUCgGCGccccuugcgcccccGUCUCa -3' miRNA: 3'- aCGC----UGGCUGGCCgUAG-UGC--------------UAGAGc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 28723 | 0.66 | 0.642608 |
Target: 5'- cUGCGACCGcgauCCGGCGacUUggGcgCUCa -3' miRNA: 3'- -ACGCUGGCu---GGCCGU--AGugCuaGAGc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 19637 | 0.66 | 0.642608 |
Target: 5'- cGCGGCCGacGCUGGCcGUCAacagCUCGc -3' miRNA: 3'- aCGCUGGC--UGGCCG-UAGUgcuaGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 4513 | 0.66 | 0.642608 |
Target: 5'- aGCGAgUGGCCGGCAgacaacaaCGCGGaCUgGg -3' miRNA: 3'- aCGCUgGCUGGCCGUa-------GUGCUaGAgC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 47318 | 0.66 | 0.642608 |
Target: 5'- aGCGGCUGACUGuGCu--GCGAUgCUCa -3' miRNA: 3'- aCGCUGGCUGGC-CGuagUGCUA-GAGc -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 24491 | 0.66 | 0.641514 |
Target: 5'- gUGCGGCCGAgauagUCGGuCAUuucagcaucacacCGCGAUCUgCGa -3' miRNA: 3'- -ACGCUGGCU-----GGCC-GUA-------------GUGCUAGA-GC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 3272 | 0.66 | 0.631659 |
Target: 5'- gGCGcGCCgGGCCGGC-UCACcGGcCUCGu -3' miRNA: 3'- aCGC-UGG-CUGGCCGuAGUG-CUaGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 46185 | 0.66 | 0.631659 |
Target: 5'- gGCGACCGAg-GGCugggCGCG-UCUCGc -3' miRNA: 3'- aCGCUGGCUggCCGua--GUGCuAGAGC- -5' |
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17098 | 3' | -56.1 | NC_004333.2 | + | 12691 | 0.66 | 0.631659 |
Target: 5'- aGCGACa-ACUGGauCAUCACGAUCacaUCGu -3' miRNA: 3'- aCGCUGgcUGGCC--GUAGUGCUAG---AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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