miRNA display CGI


Results 21 - 40 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 8297 0.66 0.630565
Target:  5'- cGCG-CgGGCCGGCGUCauccugccGCGcagcguucaaaacGUCUCGa -3'
miRNA:   3'- aCGCuGgCUGGCCGUAG--------UGC-------------UAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 31235 0.67 0.620712
Target:  5'- cGCGA-CGGCCGcGCGgcgcagCGCcGUCUCGg -3'
miRNA:   3'- aCGCUgGCUGGC-CGUa-----GUGcUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 20315 0.67 0.620712
Target:  5'- gUGCGGCgCGAUguaGGCcaGUCGCGGUCgaUCGc -3'
miRNA:   3'- -ACGCUG-GCUGg--CCG--UAGUGCUAG--AGC- -5'
17098 3' -56.1 NC_004333.2 + 17288 0.67 0.620712
Target:  5'- cGUGaacGCCGGCCGGCGcaGCGucCUCGa -3'
miRNA:   3'- aCGC---UGGCUGGCCGUagUGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 29116 0.67 0.620712
Target:  5'- cGCGAUCG-UgGGCggCGCGGUgCUCGc -3'
miRNA:   3'- aCGCUGGCuGgCCGuaGUGCUA-GAGC- -5'
17098 3' -56.1 NC_004333.2 + 30742 0.67 0.620712
Target:  5'- gGCGGCgCGAaCGGCuUCAUGAaggugCUCGa -3'
miRNA:   3'- aCGCUG-GCUgGCCGuAGUGCUa----GAGC- -5'
17098 3' -56.1 NC_004333.2 + 36058 0.67 0.620712
Target:  5'- gGCGACCGcgaACCaGGUcgcgagCACGGUgCUCGa -3'
miRNA:   3'- aCGCUGGC---UGG-CCGua----GUGCUA-GAGC- -5'
17098 3' -56.1 NC_004333.2 + 33087 0.67 0.617429
Target:  5'- aGCGAUCGACgccgaucccgauagCGGUAUCGcCGGaCUCGc -3'
miRNA:   3'- aCGCUGGCUG--------------GCCGUAGU-GCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 17683 0.67 0.598854
Target:  5'- --gGGCgCGGCCGGCGUCuugacaACGAUCgauugCGa -3'
miRNA:   3'- acgCUG-GCUGGCCGUAG------UGCUAGa----GC- -5'
17098 3' -56.1 NC_004333.2 + 23272 0.67 0.598854
Target:  5'- gGCGGCgGguACgGGUAUCACGAUUcCGc -3'
miRNA:   3'- aCGCUGgC--UGgCCGUAGUGCUAGaGC- -5'
17098 3' -56.1 NC_004333.2 + 9596 0.67 0.598854
Target:  5'- aGCGccaGCCGGCgCGGCAUCGgcCGGUUgCGc -3'
miRNA:   3'- aCGC---UGGCUG-GCCGUAGU--GCUAGaGC- -5'
17098 3' -56.1 NC_004333.2 + 18600 0.67 0.598854
Target:  5'- -aCGACCGGCgCGGCAggCGCGGg--CGg -3'
miRNA:   3'- acGCUGGCUG-GCCGUa-GUGCUagaGC- -5'
17098 3' -56.1 NC_004333.2 + 30030 0.67 0.587963
Target:  5'- cGCGGCCGcGCuCGGCAcgcgcuuuUCGCGcauUUUCGa -3'
miRNA:   3'- aCGCUGGC-UG-GCCGU--------AGUGCu--AGAGC- -5'
17098 3' -56.1 NC_004333.2 + 38466 0.67 0.577109
Target:  5'- -uUGACCGugGCCGGCGUCACGccggCGc -3'
miRNA:   3'- acGCUGGC--UGGCCGUAGUGCuagaGC- -5'
17098 3' -56.1 NC_004333.2 + 10674 0.67 0.577109
Target:  5'- cGCG-CCGGCCGGUG-CACGcuaugcaCUCGg -3'
miRNA:   3'- aCGCuGGCUGGCCGUaGUGCua-----GAGC- -5'
17098 3' -56.1 NC_004333.2 + 19823 0.67 0.577109
Target:  5'- aGCGGCCGAUcgcgucguugaCGGCAgcggCGCcGUCUUGc -3'
miRNA:   3'- aCGCUGGCUG-----------GCCGUa---GUGcUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 43440 0.67 0.5663
Target:  5'- gGCuGACgGACgCGcGCAUCGCGcgCUUGc -3'
miRNA:   3'- aCG-CUGgCUG-GC-CGUAGUGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 4656 0.67 0.5663
Target:  5'- gGCGACgggcaGGCCGGCG-CGCgGGUCUUu -3'
miRNA:   3'- aCGCUGg----CUGGCCGUaGUG-CUAGAGc -5'
17098 3' -56.1 NC_004333.2 + 17582 0.67 0.5663
Target:  5'- gUGCGACCGGCUGcaGCAggucggUGCGGUCgagugCGa -3'
miRNA:   3'- -ACGCUGGCUGGC--CGUa-----GUGCUAGa----GC- -5'
17098 3' -56.1 NC_004333.2 + 2719 0.67 0.5663
Target:  5'- uUGCGGCUGauacGCCGGCAagCGCGAUg--- -3'
miRNA:   3'- -ACGCUGGC----UGGCCGUa-GUGCUAgagc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.