miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 2460 0.72 0.3438
Target:  5'- gGCGACCG-CCGGCgccGUCAUGggCUaCGc -3'
miRNA:   3'- aCGCUGGCuGGCCG---UAGUGCuaGA-GC- -5'
17098 3' -56.1 NC_004333.2 + 2565 0.66 0.675356
Target:  5'- aUGCGAgaCGAUCGGCAaUCACGGccgUCcaggCGg -3'
miRNA:   3'- -ACGCUg-GCUGGCCGU-AGUGCU---AGa---GC- -5'
17098 3' -56.1 NC_004333.2 + 2701 0.71 0.352099
Target:  5'- gGCGGCCGACaGGC----CGAUCUCGu -3'
miRNA:   3'- aCGCUGGCUGgCCGuaguGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 2719 0.67 0.5663
Target:  5'- uUGCGGCUGauacGCCGGCAagCGCGAUg--- -3'
miRNA:   3'- -ACGCUGGC----UGGCCGUa-GUGCUAgagc -5'
17098 3' -56.1 NC_004333.2 + 2758 0.66 0.652454
Target:  5'- cGCGGCCGccguGCCGGUcgcguucGUCACGAcCgugaagCGg -3'
miRNA:   3'- aCGCUGGC----UGGCCG-------UAGUGCUaGa-----GC- -5'
17098 3' -56.1 NC_004333.2 + 2826 0.89 0.023206
Target:  5'- cGCGACCGGCaCGGCGgcCGCGAUCUCGg -3'
miRNA:   3'- aCGCUGGCUG-GCCGUa-GUGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 3272 0.66 0.631659
Target:  5'- gGCGcGCCgGGCCGGC-UCACcGGcCUCGu -3'
miRNA:   3'- aCGC-UGG-CUGGCCGuAGUG-CUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 3373 0.72 0.311259
Target:  5'- aGCGGaacaaugUCGACCGGCGUCGCcGUCgUCGc -3'
miRNA:   3'- aCGCU-------GGCUGGCCGUAGUGcUAG-AGC- -5'
17098 3' -56.1 NC_004333.2 + 3522 0.71 0.386695
Target:  5'- cUGCGGCUGAUCGGCGUaaaGCGGgaUCa -3'
miRNA:   3'- -ACGCUGGCUGGCCGUAg--UGCUagAGc -5'
17098 3' -56.1 NC_004333.2 + 3780 0.7 0.395688
Target:  5'- gGCGuuCUGAUCGGCcuUCGCGAUCUgCGc -3'
miRNA:   3'- aCGCu-GGCUGGCCGu-AGUGCUAGA-GC- -5'
17098 3' -56.1 NC_004333.2 + 3933 0.68 0.513191
Target:  5'- gGCaGGCCGACCGGCAggUugGcgC-CGu -3'
miRNA:   3'- aCG-CUGGCUGGCCGUa-GugCuaGaGC- -5'
17098 3' -56.1 NC_004333.2 + 4125 0.66 0.675356
Target:  5'- cGCGG-CGGCUGGUgguauAUCACGcaguuUCUCGa -3'
miRNA:   3'- aCGCUgGCUGGCCG-----UAGUGCu----AGAGC- -5'
17098 3' -56.1 NC_004333.2 + 4513 0.66 0.642608
Target:  5'- aGCGAgUGGCCGGCAgacaacaaCGCGGaCUgGg -3'
miRNA:   3'- aCGCUgGCUGGCCGUa-------GUGCUaGAgC- -5'
17098 3' -56.1 NC_004333.2 + 4656 0.67 0.5663
Target:  5'- gGCGACgggcaGGCCGGCG-CGCgGGUCUUu -3'
miRNA:   3'- aCGCUGg----CUGGCCGUaGUG-CUAGAGc -5'
17098 3' -56.1 NC_004333.2 + 5541 0.66 0.65464
Target:  5'- cGUGGCCGGCgaCGGCuuggCGCGAgugcagaccguucagCUCGa -3'
miRNA:   3'- aCGCUGGCUG--GCCGua--GUGCUa--------------GAGC- -5'
17098 3' -56.1 NC_004333.2 + 7684 0.68 0.555543
Target:  5'- gGCGAacCCGACCacGGCGUCguaGCGGUgaUCGg -3'
miRNA:   3'- aCGCU--GGCUGG--CCGUAG---UGCUAg-AGC- -5'
17098 3' -56.1 NC_004333.2 + 8225 0.68 0.522613
Target:  5'- cGCGGCCGACCuGUcgccacaccugucGUCgACGggCUCGu -3'
miRNA:   3'- aCGCUGGCUGGcCG-------------UAG-UGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 8297 0.66 0.630565
Target:  5'- cGCG-CgGGCCGGCGUCauccugccGCGcagcguucaaaacGUCUCGa -3'
miRNA:   3'- aCGCuGgCUGGCCGUAG--------UGC-------------UAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 8780 0.75 0.224304
Target:  5'- cGCgGACuCGAgCGGCGUCACGGUCg-- -3'
miRNA:   3'- aCG-CUG-GCUgGCCGUAGUGCUAGagc -5'
17098 3' -56.1 NC_004333.2 + 8996 0.78 0.130687
Target:  5'- gGCGACCGACgCGGCGUuCGCGG-CUUGc -3'
miRNA:   3'- aCGCUGGCUG-GCCGUA-GUGCUaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.