miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 9596 0.67 0.598854
Target:  5'- aGCGccaGCCGGCgCGGCAUCGgcCGGUUgCGc -3'
miRNA:   3'- aCGC---UGGCUG-GCCGUAGU--GCUAGaGC- -5'
17098 3' -56.1 NC_004333.2 + 10211 0.73 0.275508
Target:  5'- aUGCGGCCG-UCGGCAUCaaagcugcgcGCGGUCUg- -3'
miRNA:   3'- -ACGCUGGCuGGCCGUAG----------UGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 10674 0.67 0.577109
Target:  5'- cGCG-CCGGCCGGUG-CACGcuaugcaCUCGg -3'
miRNA:   3'- aCGCuGGCUGGCCGUaGUGCua-----GAGC- -5'
17098 3' -56.1 NC_004333.2 + 11195 0.68 0.555543
Target:  5'- cGUG-CUGcCCGGCGagGCGAUUUCGu -3'
miRNA:   3'- aCGCuGGCuGGCCGUagUGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 11682 0.66 0.675356
Target:  5'- cGCGAagugaCGGCCGGCGcguuUCAgGAUUUg- -3'
miRNA:   3'- aCGCUg----GCUGGCCGU----AGUgCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 11931 0.68 0.523664
Target:  5'- -uCGGCCGACCGGCAgacggaaGCGAUgUa- -3'
miRNA:   3'- acGCUGGCUGGCCGUag-----UGCUAgAgc -5'
17098 3' -56.1 NC_004333.2 + 12691 0.66 0.631659
Target:  5'- aGCGACa-ACUGGauCAUCACGAUCacaUCGu -3'
miRNA:   3'- aCGCUGgcUGGCC--GUAGUGCUAG---AGC- -5'
17098 3' -56.1 NC_004333.2 + 13368 0.71 0.352099
Target:  5'- cGCGGCaCGAgCGGCGUgucCAUGAUCUgGu -3'
miRNA:   3'- aCGCUG-GCUgGCCGUA---GUGCUAGAgC- -5'
17098 3' -56.1 NC_004333.2 + 13827 0.71 0.369119
Target:  5'- cGCGAgCGGCgcgCGGCGUCcuACGcgCUCGa -3'
miRNA:   3'- aCGCUgGCUG---GCCGUAG--UGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 14244 0.66 0.664467
Target:  5'- cGaCGAgCGAcCCGGCAUCGggcCGGUCgUCa -3'
miRNA:   3'- aC-GCUgGCU-GGCCGUAGU---GCUAG-AGc -5'
17098 3' -56.1 NC_004333.2 + 14493 0.72 0.335642
Target:  5'- gGCuGAUCGACUGGCggCGCGAgaaaCUCGc -3'
miRNA:   3'- aCG-CUGGCUGGCCGuaGUGCUa---GAGC- -5'
17098 3' -56.1 NC_004333.2 + 15064 0.66 0.664467
Target:  5'- gGCGGCCcgcuaACCGGCuUCuCGAUCgacgUCGg -3'
miRNA:   3'- aCGCUGGc----UGGCCGuAGuGCUAG----AGC- -5'
17098 3' -56.1 NC_004333.2 + 15761 0.69 0.472222
Target:  5'- aGCGACCGaACCGucGCGacuUCAgcaggucgugauCGAUCUCGa -3'
miRNA:   3'- aCGCUGGC-UGGC--CGU---AGU------------GCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 17288 0.67 0.620712
Target:  5'- cGUGaacGCCGGCCGGCGcaGCGucCUCGa -3'
miRNA:   3'- aCGC---UGGCUGGCCGUagUGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 17355 0.72 0.335642
Target:  5'- cUGCG-CCGGCCGGCGuUCACG-UCg-- -3'
miRNA:   3'- -ACGCuGGCUGGCCGU-AGUGCuAGagc -5'
17098 3' -56.1 NC_004333.2 + 17573 0.68 0.513191
Target:  5'- cGaCGACCuGAUCGGCAagucgCGCGA-CUCGc -3'
miRNA:   3'- aC-GCUGG-CUGGCCGUa----GUGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 17582 0.67 0.5663
Target:  5'- gUGCGACCGGCUGcaGCAggucggUGCGGUCgagugCGa -3'
miRNA:   3'- -ACGCUGGCUGGC--CGUa-----GUGCUAGa----GC- -5'
17098 3' -56.1 NC_004333.2 + 17683 0.67 0.598854
Target:  5'- --gGGCgCGGCCGGCGUCuugacaACGAUCgauugCGa -3'
miRNA:   3'- acgCUG-GCUGGCCGUAG------UGCUAGa----GC- -5'
17098 3' -56.1 NC_004333.2 + 18600 0.67 0.598854
Target:  5'- -aCGACCGGCgCGGCAggCGCGGg--CGg -3'
miRNA:   3'- acGCUGGCUG-GCCGUa-GUGCUagaGC- -5'
17098 3' -56.1 NC_004333.2 + 19637 0.66 0.642608
Target:  5'- cGCGGCCGacGCUGGCcGUCAacagCUCGc -3'
miRNA:   3'- aCGCUGGC--UGGCCG-UAGUgcuaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.