miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 47318 0.66 0.642608
Target:  5'- aGCGGCUGACUGuGCu--GCGAUgCUCa -3'
miRNA:   3'- aCGCUGGCUGGC-CGuagUGCUA-GAGc -5'
17098 3' -56.1 NC_004333.2 + 46185 0.66 0.631659
Target:  5'- gGCGACCGAg-GGCugggCGCG-UCUCGc -3'
miRNA:   3'- aCGCUGGCUggCCGua--GUGCuAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 45673 1.08 0.000943
Target:  5'- uUGCGACCGACCGGCAUCACGAUCUCGc -3'
miRNA:   3'- -ACGCUGGCUGGCCGUAGUGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 44974 0.69 0.472222
Target:  5'- gGCGGCCGACUGcaGCAccaUACGAUCUa- -3'
miRNA:   3'- aCGCUGGCUGGC--CGUa--GUGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 44584 0.77 0.160175
Target:  5'- gGUGAUCGGCCGGCGUCcaguccggguucgcuGCGAUUUCc -3'
miRNA:   3'- aCGCUGGCUGGCCGUAG---------------UGCUAGAGc -5'
17098 3' -56.1 NC_004333.2 + 44330 0.7 0.442608
Target:  5'- cUGCGGCgGcaACaCGGCuAUCACGAUCUg- -3'
miRNA:   3'- -ACGCUGgC--UG-GCCG-UAGUGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 44201 0.73 0.268628
Target:  5'- aGCGGCCGAguCCGGCcucgGUCAgauCGGUCUUGc -3'
miRNA:   3'- aCGCUGGCU--GGCCG----UAGU---GCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 43440 0.67 0.5663
Target:  5'- gGCuGACgGACgCGcGCAUCGCGcgCUUGc -3'
miRNA:   3'- aCG-CUGgCUG-GC-CGUAGUGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 43358 0.66 0.650267
Target:  5'- aGCGcauaGCCGGCCGGgAUCgGCGccccuugcgcccccGUCUCa -3'
miRNA:   3'- aCGC----UGGCUGGCCgUAG-UGC--------------UAGAGc -5'
17098 3' -56.1 NC_004333.2 + 41292 0.7 0.442608
Target:  5'- gGCGACaCGACCGGCGaCAgGuagccCUCGc -3'
miRNA:   3'- aCGCUG-GCUGGCCGUaGUgCua---GAGC- -5'
17098 3' -56.1 NC_004333.2 + 41010 0.78 0.134358
Target:  5'- gUGCGACCGACUguGGCGUCGCGAa---- -3'
miRNA:   3'- -ACGCUGGCUGG--CCGUAGUGCUagagc -5'
17098 3' -56.1 NC_004333.2 + 40230 0.71 0.386695
Target:  5'- cGCGACgCGGCCGGCcaaccgAUCgACGAaUUCGa -3'
miRNA:   3'- aCGCUG-GCUGGCCG------UAG-UGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 39636 0.68 0.555543
Target:  5'- aGCGGCCGACUGcugccggacGCGaacuUCACGGUCg-- -3'
miRNA:   3'- aCGCUGGCUGGC---------CGU----AGUGCUAGagc -5'
17098 3' -56.1 NC_004333.2 + 39260 0.7 0.423458
Target:  5'- aGCGGCCGGCaGGCG-CACGcgCgcgCGa -3'
miRNA:   3'- aCGCUGGCUGgCCGUaGUGCuaGa--GC- -5'
17098 3' -56.1 NC_004333.2 + 39131 0.72 0.327627
Target:  5'- cGCGACgGcAUCGGCuugccgAUCAcCGAUCUCGa -3'
miRNA:   3'- aCGCUGgC-UGGCCG------UAGU-GCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 38759 0.7 0.442608
Target:  5'- aGCGGCCacGAgCGGCAUCGcCGAgCUUGc -3'
miRNA:   3'- aCGCUGG--CUgGCCGUAGU-GCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 38466 0.67 0.577109
Target:  5'- -uUGACCGugGCCGGCGUCACGccggCGc -3'
miRNA:   3'- acGCUGGC--UGGCCGUAGUGCuagaGC- -5'
17098 3' -56.1 NC_004333.2 + 38171 0.8 0.090473
Target:  5'- gUGCGACCagauGCCGgguaagccguucaGCAUCACGAUCUCGg -3'
miRNA:   3'- -ACGCUGGc---UGGC-------------CGUAGUGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 38141 0.71 0.360539
Target:  5'- cGCGuucgacGCCGAcCCGGCcgC-CGAUCUUGg -3'
miRNA:   3'- aCGC------UGGCU-GGCCGuaGuGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 37572 0.66 0.664467
Target:  5'- cGUGGCCGugGCCGGCGgcccauugCuCGAUCUg- -3'
miRNA:   3'- aCGCUGGC--UGGCCGUa-------GuGCUAGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.