miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 8996 0.78 0.130687
Target:  5'- gGCGACCGACgCGGCGUuCGCGG-CUUGc -3'
miRNA:   3'- aCGCUGGCUG-GCCGUA-GUGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 17573 0.68 0.513191
Target:  5'- cGaCGACCuGAUCGGCAagucgCGCGA-CUCGc -3'
miRNA:   3'- aC-GCUGG-CUGGCCGUa----GUGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 7684 0.68 0.555543
Target:  5'- gGCGAacCCGACCacGGCGUCguaGCGGUgaUCGg -3'
miRNA:   3'- aCGCU--GGCUGG--CCGUAG---UGCUAg-AGC- -5'
17098 3' -56.1 NC_004333.2 + 2565 0.66 0.675356
Target:  5'- aUGCGAgaCGAUCGGCAaUCACGGccgUCcaggCGg -3'
miRNA:   3'- -ACGCUg-GCUGGCCGU-AGUGCU---AGa---GC- -5'
17098 3' -56.1 NC_004333.2 + 39131 0.72 0.327627
Target:  5'- cGCGACgGcAUCGGCuugccgAUCAcCGAUCUCGa -3'
miRNA:   3'- aCGCUGgC-UGGCCG------UAGU-GCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 2701 0.71 0.352099
Target:  5'- gGCGGCCGACaGGC----CGAUCUCGu -3'
miRNA:   3'- aCGCUGGCUGgCCGuaguGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 38141 0.71 0.360539
Target:  5'- cGCGuucgacGCCGAcCCGGCcgC-CGAUCUUGg -3'
miRNA:   3'- aCGC------UGGCU-GGCCGuaGuGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 3522 0.71 0.386695
Target:  5'- cUGCGGCUGAUCGGCGUaaaGCGGgaUCa -3'
miRNA:   3'- -ACGCUGGCUGGCCGUAg--UGCUagAGc -5'
17098 3' -56.1 NC_004333.2 + 39260 0.7 0.423458
Target:  5'- aGCGGCCGGCaGGCG-CACGcgCgcgCGa -3'
miRNA:   3'- aCGCUGGCUGgCCGUaGUGCuaGa--GC- -5'
17098 3' -56.1 NC_004333.2 + 3933 0.68 0.513191
Target:  5'- gGCaGGCCGACCGGCAggUugGcgC-CGu -3'
miRNA:   3'- aCG-CUGGCUGGCCGUa-GugCuaGaGC- -5'
17098 3' -56.1 NC_004333.2 + 44330 0.7 0.442608
Target:  5'- cUGCGGCgGcaACaCGGCuAUCACGAUCUg- -3'
miRNA:   3'- -ACGCUGgC--UG-GCCG-UAGUGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 3780 0.7 0.395688
Target:  5'- gGCGuuCUGAUCGGCcuUCGCGAUCUgCGc -3'
miRNA:   3'- aCGCu-GGCUGGCCGu-AGUGCUAGA-GC- -5'
17098 3' -56.1 NC_004333.2 + 30339 0.75 0.212274
Target:  5'- cGCGGCCGcACCGGCAgacaguuUCACGcggUUCGg -3'
miRNA:   3'- aCGCUGGC-UGGCCGU-------AGUGCua-GAGC- -5'
17098 3' -56.1 NC_004333.2 + 15761 0.69 0.472222
Target:  5'- aGCGACCGaACCGucGCGacuUCAgcaggucgugauCGAUCUCGa -3'
miRNA:   3'- aCGCUGGC-UGGC--CGU---AGU------------GCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 10211 0.73 0.275508
Target:  5'- aUGCGGCCG-UCGGCAUCaaagcugcgcGCGGUCUg- -3'
miRNA:   3'- -ACGCUGGCuGGCCGUAG----------UGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 40230 0.71 0.386695
Target:  5'- cGCGACgCGGCCGGCcaaccgAUCgACGAaUUCGa -3'
miRNA:   3'- aCGCUG-GCUGGCCG------UAG-UGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 44974 0.69 0.472222
Target:  5'- gGCGGCCGACUGcaGCAccaUACGAUCUa- -3'
miRNA:   3'- aCGCUGGCUGGC--CGUa--GUGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 39636 0.68 0.555543
Target:  5'- aGCGGCCGACUGcugccggacGCGaacuUCACGGUCg-- -3'
miRNA:   3'- aCGCUGGCUGGC---------CGU----AGUGCUAGagc -5'
17098 3' -56.1 NC_004333.2 + 3373 0.72 0.311259
Target:  5'- aGCGGaacaaugUCGACCGGCGUCGCcGUCgUCGc -3'
miRNA:   3'- aCGCU-------GGCUGGCCGUAGUGcUAG-AGC- -5'
17098 3' -56.1 NC_004333.2 + 13368 0.71 0.352099
Target:  5'- cGCGGCaCGAgCGGCGUgucCAUGAUCUgGu -3'
miRNA:   3'- aCGCUG-GCUgGCCGUA---GUGCUAGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.