miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 3780 0.7 0.395688
Target:  5'- gGCGuuCUGAUCGGCcuUCGCGAUCUgCGc -3'
miRNA:   3'- aCGCu-GGCUGGCCGu-AGUGCUAGA-GC- -5'
17098 3' -56.1 NC_004333.2 + 3373 0.72 0.311259
Target:  5'- aGCGGaacaaugUCGACCGGCGUCGCcGUCgUCGc -3'
miRNA:   3'- aCGCU-------GGCUGGCCGUAGUGcUAG-AGC- -5'
17098 3' -56.1 NC_004333.2 + 5541 0.66 0.65464
Target:  5'- cGUGGCCGGCgaCGGCuuggCGCGAgugcagaccguucagCUCGa -3'
miRNA:   3'- aCGCUGGCUG--GCCGua--GUGCUa--------------GAGC- -5'
17098 3' -56.1 NC_004333.2 + 31235 0.67 0.620712
Target:  5'- cGCGA-CGGCCGcGCGgcgcagCGCcGUCUCGg -3'
miRNA:   3'- aCGCUgGCUGGC-CGUa-----GUGcUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 17573 0.68 0.513191
Target:  5'- cGaCGACCuGAUCGGCAagucgCGCGA-CUCGc -3'
miRNA:   3'- aC-GCUGG-CUGGCCGUa----GUGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 10211 0.73 0.275508
Target:  5'- aUGCGGCCG-UCGGCAUCaaagcugcgcGCGGUCUg- -3'
miRNA:   3'- -ACGCUGGCuGGCCGUAG----------UGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 17288 0.67 0.620712
Target:  5'- cGUGaacGCCGGCCGGCGcaGCGucCUCGa -3'
miRNA:   3'- aCGC---UGGCUGGCCGUagUGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 30339 0.75 0.212274
Target:  5'- cGCGGCCGcACCGGCAgacaguuUCACGcggUUCGg -3'
miRNA:   3'- aCGCUGGC-UGGCCGU-------AGUGCua-GAGC- -5'
17098 3' -56.1 NC_004333.2 + 8996 0.78 0.130687
Target:  5'- gGCGACCGACgCGGCGUuCGCGG-CUUGc -3'
miRNA:   3'- aCGCUGGCUG-GCCGUA-GUGCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 39636 0.68 0.555543
Target:  5'- aGCGGCCGACUGcugccggacGCGaacuUCACGGUCg-- -3'
miRNA:   3'- aCGCUGGCUGGC---------CGU----AGUGCUAGagc -5'
17098 3' -56.1 NC_004333.2 + 19637 0.66 0.642608
Target:  5'- cGCGGCCGacGCUGGCcGUCAacagCUCGc -3'
miRNA:   3'- aCGCUGGC--UGGCCG-UAGUgcuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 38141 0.71 0.360539
Target:  5'- cGCGuucgacGCCGAcCCGGCcgC-CGAUCUUGg -3'
miRNA:   3'- aCGC------UGGCU-GGCCGuaGuGCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 39131 0.72 0.327627
Target:  5'- cGCGACgGcAUCGGCuugccgAUCAcCGAUCUCGa -3'
miRNA:   3'- aCGCUGgC-UGGCCG------UAGU-GCUAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 10674 0.67 0.577109
Target:  5'- cGCG-CCGGCCGGUG-CACGcuaugcaCUCGg -3'
miRNA:   3'- aCGCuGGCUGGCCGUaGUGCua-----GAGC- -5'
17098 3' -56.1 NC_004333.2 + 12691 0.66 0.631659
Target:  5'- aGCGACa-ACUGGauCAUCACGAUCacaUCGu -3'
miRNA:   3'- aCGCUGgcUGGCC--GUAGUGCUAG---AGC- -5'
17098 3' -56.1 NC_004333.2 + 2565 0.66 0.675356
Target:  5'- aUGCGAgaCGAUCGGCAaUCACGGccgUCcaggCGg -3'
miRNA:   3'- -ACGCUg-GCUGGCCGU-AGUGCU---AGa---GC- -5'
17098 3' -56.1 NC_004333.2 + 29116 0.67 0.620712
Target:  5'- cGCGAUCG-UgGGCggCGCGGUgCUCGc -3'
miRNA:   3'- aCGCUGGCuGgCCGuaGUGCUA-GAGC- -5'
17098 3' -56.1 NC_004333.2 + 37373 0.68 0.513191
Target:  5'- cGCGACCGACUGgaacGCGUCGCc--UUCGa -3'
miRNA:   3'- aCGCUGGCUGGC----CGUAGUGcuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 11931 0.68 0.523664
Target:  5'- -uCGGCCGACCGGCAgacggaaGCGAUgUa- -3'
miRNA:   3'- acGCUGGCUGGCCGUag-----UGCUAgAgc -5'
17098 3' -56.1 NC_004333.2 + 8225 0.68 0.522613
Target:  5'- cGCGGCCGACCuGUcgccacaccugucGUCgACGggCUCGu -3'
miRNA:   3'- aCGCUGGCUGGcCG-------------UAG-UGCuaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.