miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 3' -56.1 NC_004333.2 + 30030 0.67 0.587963
Target:  5'- cGCGGCCGcGCuCGGCAcgcgcuuuUCGCGcauUUUCGa -3'
miRNA:   3'- aCGCUGGC-UG-GCCGU--------AGUGCu--AGAGC- -5'
17098 3' -56.1 NC_004333.2 + 8297 0.66 0.630565
Target:  5'- cGCG-CgGGCCGGCGUCauccugccGCGcagcguucaaaacGUCUCGa -3'
miRNA:   3'- aCGCuGgCUGGCCGUAG--------UGC-------------UAGAGC- -5'
17098 3' -56.1 NC_004333.2 + 20315 0.67 0.620712
Target:  5'- gUGCGGCgCGAUguaGGCcaGUCGCGGUCgaUCGc -3'
miRNA:   3'- -ACGCUG-GCUGg--CCG--UAGUGCUAG--AGC- -5'
17098 3' -56.1 NC_004333.2 + 29116 0.67 0.620712
Target:  5'- cGCGAUCG-UgGGCggCGCGGUgCUCGc -3'
miRNA:   3'- aCGCUGGCuGgCCGuaGUGCUA-GAGC- -5'
17098 3' -56.1 NC_004333.2 + 30742 0.67 0.620712
Target:  5'- gGCGGCgCGAaCGGCuUCAUGAaggugCUCGa -3'
miRNA:   3'- aCGCUG-GCUgGCCGuAGUGCUa----GAGC- -5'
17098 3' -56.1 NC_004333.2 + 36058 0.67 0.620712
Target:  5'- gGCGACCGcgaACCaGGUcgcgagCACGGUgCUCGa -3'
miRNA:   3'- aCGCUGGC---UGG-CCGua----GUGCUA-GAGC- -5'
17098 3' -56.1 NC_004333.2 + 33087 0.67 0.617429
Target:  5'- aGCGAUCGACgccgaucccgauagCGGUAUCGcCGGaCUCGc -3'
miRNA:   3'- aCGCUGGCUG--------------GCCGUAGU-GCUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 17683 0.67 0.598854
Target:  5'- --gGGCgCGGCCGGCGUCuugacaACGAUCgauugCGa -3'
miRNA:   3'- acgCUG-GCUGGCCGUAG------UGCUAGa----GC- -5'
17098 3' -56.1 NC_004333.2 + 23272 0.67 0.598854
Target:  5'- gGCGGCgGguACgGGUAUCACGAUUcCGc -3'
miRNA:   3'- aCGCUGgC--UGgCCGUAGUGCUAGaGC- -5'
17098 3' -56.1 NC_004333.2 + 3272 0.66 0.631659
Target:  5'- gGCGcGCCgGGCCGGC-UCACcGGcCUCGu -3'
miRNA:   3'- aCGC-UGG-CUGGCCGuAGUG-CUaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 47318 0.66 0.642608
Target:  5'- aGCGGCUGACUGuGCu--GCGAUgCUCa -3'
miRNA:   3'- aCGCUGGCUGGC-CGuagUGCUA-GAGc -5'
17098 3' -56.1 NC_004333.2 + 28723 0.66 0.642608
Target:  5'- cUGCGACCGcgauCCGGCGacUUggGcgCUCa -3'
miRNA:   3'- -ACGCUGGCu---GGCCGU--AGugCuaGAGc -5'
17098 3' -56.1 NC_004333.2 + 4125 0.66 0.675356
Target:  5'- cGCGG-CGGCUGGUgguauAUCACGcaguuUCUCGa -3'
miRNA:   3'- aCGCUgGCUGGCCG-----UAGUGCu----AGAGC- -5'
17098 3' -56.1 NC_004333.2 + 14244 0.66 0.664467
Target:  5'- cGaCGAgCGAcCCGGCAUCGggcCGGUCgUCa -3'
miRNA:   3'- aC-GCUgGCU-GGCCGUAGU---GCUAG-AGc -5'
17098 3' -56.1 NC_004333.2 + 37572 0.66 0.664467
Target:  5'- cGUGGCCGugGCCGGCGgcccauugCuCGAUCUg- -3'
miRNA:   3'- aCGCUGGC--UGGCCGUa-------GuGCUAGAgc -5'
17098 3' -56.1 NC_004333.2 + 15064 0.66 0.664467
Target:  5'- gGCGGCCcgcuaACCGGCuUCuCGAUCgacgUCGg -3'
miRNA:   3'- aCGCUGGc----UGGCCGuAGuGCUAG----AGC- -5'
17098 3' -56.1 NC_004333.2 + 32403 0.66 0.664467
Target:  5'- aGCGAC---CCGGCAgccgugCACGcgCUCGu -3'
miRNA:   3'- aCGCUGgcuGGCCGUa-----GUGCuaGAGC- -5'
17098 3' -56.1 NC_004333.2 + 36162 0.66 0.652454
Target:  5'- cGUGGCUGGCgCGcagcgccGCGUCACGGgccagCUCGu -3'
miRNA:   3'- aCGCUGGCUG-GC-------CGUAGUGCUa----GAGC- -5'
17098 3' -56.1 NC_004333.2 + 43358 0.66 0.650267
Target:  5'- aGCGcauaGCCGGCCGGgAUCgGCGccccuugcgcccccGUCUCa -3'
miRNA:   3'- aCGC----UGGCUGGCCgUAG-UGC--------------UAGAGc -5'
17098 3' -56.1 NC_004333.2 + 4513 0.66 0.642608
Target:  5'- aGCGAgUGGCCGGCAgacaacaaCGCGGaCUgGg -3'
miRNA:   3'- aCGCUgGCUGGCCGUa-------GUGCUaGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.