miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17098 5' -54.6 NC_004333.2 + 33029 0.66 0.689785
Target:  5'- cGUCGAuCGCUuUGAGCGCCGcacGUGc- -3'
miRNA:   3'- -CAGCUcGCGGuACUCGUGGCu--CAUaa -5'
17098 5' -54.6 NC_004333.2 + 9109 0.66 0.689785
Target:  5'- uGUCGAGCGCaAUGucGCcGCCGAGc--- -3'
miRNA:   3'- -CAGCUCGCGgUACu-CG-UGGCUCauaa -5'
17098 5' -54.6 NC_004333.2 + 42204 0.66 0.678549
Target:  5'- -gUGAGCGUCAUGucguGCACCGGc---- -3'
miRNA:   3'- caGCUCGCGGUACu---CGUGGCUcauaa -5'
17098 5' -54.6 NC_004333.2 + 46283 0.66 0.667267
Target:  5'- uUCGAGCGCC-UG-GCGCUGAu---- -3'
miRNA:   3'- cAGCUCGCGGuACuCGUGGCUcauaa -5'
17098 5' -54.6 NC_004333.2 + 22947 0.66 0.644607
Target:  5'- -aCGAGCGCCAguacGAucGCGCCGAu---- -3'
miRNA:   3'- caGCUCGCGGUa---CU--CGUGGCUcauaa -5'
17098 5' -54.6 NC_004333.2 + 28927 0.67 0.621898
Target:  5'- cGUCGGuGCGUagcGGGCGCCGAGg--- -3'
miRNA:   3'- -CAGCU-CGCGguaCUCGUGGCUCauaa -5'
17098 5' -54.6 NC_004333.2 + 45078 0.67 0.576677
Target:  5'- gGUCGAGCGgCcgGAcagcGCGCCGuGGUAg- -3'
miRNA:   3'- -CAGCUCGCgGuaCU----CGUGGC-UCAUaa -5'
17098 5' -54.6 NC_004333.2 + 37201 0.68 0.565469
Target:  5'- cGUCGuGCGgCGUGAGCGCuuCGAGc--- -3'
miRNA:   3'- -CAGCuCGCgGUACUCGUG--GCUCauaa -5'
17098 5' -54.6 NC_004333.2 + 38775 0.68 0.543235
Target:  5'- -gCGAGCGCCGgcGGCugCGGGa--- -3'
miRNA:   3'- caGCUCGCGGUacUCGugGCUCauaa -5'
17098 5' -54.6 NC_004333.2 + 9736 0.69 0.489066
Target:  5'- cGUCG-GCGaCAUGAGCGCCGGa---- -3'
miRNA:   3'- -CAGCuCGCgGUACUCGUGGCUcauaa -5'
17098 5' -54.6 NC_004333.2 + 46887 0.7 0.437561
Target:  5'- -cCGAGUGCCGcGAGCGCCu-GUGUUc -3'
miRNA:   3'- caGCUCGCGGUaCUCGUGGcuCAUAA- -5'
17098 5' -54.6 NC_004333.2 + 32205 0.72 0.34468
Target:  5'- -aCGAGCGCgAUGAGCacgucGCCGAGc--- -3'
miRNA:   3'- caGCUCGCGgUACUCG-----UGGCUCauaa -5'
17098 5' -54.6 NC_004333.2 + 43940 0.74 0.259885
Target:  5'- uUUGcAGUGCCGcGAGCACCGGGUGc- -3'
miRNA:   3'- cAGC-UCGCGGUaCUCGUGGCUCAUaa -5'
17098 5' -54.6 NC_004333.2 + 32521 0.75 0.227333
Target:  5'- cGUCGcGGCGCUgaaGGGCGCCGAGUAc- -3'
miRNA:   3'- -CAGC-UCGCGGua-CUCGUGGCUCAUaa -5'
17098 5' -54.6 NC_004333.2 + 45636 1.04 0.001682
Target:  5'- gGUCGAGCGCCAUGAGCACCGAGUAUUc -3'
miRNA:   3'- -CAGCUCGCGGUACUCGUGGCUCAUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.