Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17098 | 5' | -54.6 | NC_004333.2 | + | 42204 | 0.66 | 0.678549 |
Target: 5'- -gUGAGCGUCAUGucguGCACCGGc---- -3' miRNA: 3'- caGCUCGCGGUACu---CGUGGCUcauaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 45636 | 1.04 | 0.001682 |
Target: 5'- gGUCGAGCGCCAUGAGCACCGAGUAUUc -3' miRNA: 3'- -CAGCUCGCGGUACUCGUGGCUCAUAA- -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 32521 | 0.75 | 0.227333 |
Target: 5'- cGUCGcGGCGCUgaaGGGCGCCGAGUAc- -3' miRNA: 3'- -CAGC-UCGCGGua-CUCGUGGCUCAUaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 43940 | 0.74 | 0.259885 |
Target: 5'- uUUGcAGUGCCGcGAGCACCGGGUGc- -3' miRNA: 3'- cAGC-UCGCGGUaCUCGUGGCUCAUaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 38775 | 0.68 | 0.543235 |
Target: 5'- -gCGAGCGCCGgcGGCugCGGGa--- -3' miRNA: 3'- caGCUCGCGGUacUCGugGCUCauaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 37201 | 0.68 | 0.565469 |
Target: 5'- cGUCGuGCGgCGUGAGCGCuuCGAGc--- -3' miRNA: 3'- -CAGCuCGCgGUACUCGUG--GCUCauaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 45078 | 0.67 | 0.576677 |
Target: 5'- gGUCGAGCGgCcgGAcagcGCGCCGuGGUAg- -3' miRNA: 3'- -CAGCUCGCgGuaCU----CGUGGC-UCAUaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 22947 | 0.66 | 0.644607 |
Target: 5'- -aCGAGCGCCAguacGAucGCGCCGAu---- -3' miRNA: 3'- caGCUCGCGGUa---CU--CGUGGCUcauaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 46283 | 0.66 | 0.667267 |
Target: 5'- uUCGAGCGCC-UG-GCGCUGAu---- -3' miRNA: 3'- cAGCUCGCGGuACuCGUGGCUcauaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 9109 | 0.66 | 0.689785 |
Target: 5'- uGUCGAGCGCaAUGucGCcGCCGAGc--- -3' miRNA: 3'- -CAGCUCGCGgUACu-CG-UGGCUCauaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 28927 | 0.67 | 0.621898 |
Target: 5'- cGUCGGuGCGUagcGGGCGCCGAGg--- -3' miRNA: 3'- -CAGCU-CGCGguaCUCGUGGCUCauaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 9736 | 0.69 | 0.489066 |
Target: 5'- cGUCG-GCGaCAUGAGCGCCGGa---- -3' miRNA: 3'- -CAGCuCGCgGUACUCGUGGCUcauaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 46887 | 0.7 | 0.437561 |
Target: 5'- -cCGAGUGCCGcGAGCGCCu-GUGUUc -3' miRNA: 3'- caGCUCGCGGUaCUCGUGGcuCAUAA- -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 32205 | 0.72 | 0.34468 |
Target: 5'- -aCGAGCGCgAUGAGCacgucGCCGAGc--- -3' miRNA: 3'- caGCUCGCGgUACUCG-----UGGCUCauaa -5' |
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17098 | 5' | -54.6 | NC_004333.2 | + | 33029 | 0.66 | 0.689785 |
Target: 5'- cGUCGAuCGCUuUGAGCGCCGcacGUGc- -3' miRNA: 3'- -CAGCUcGCGGuACUCGUGGCu--CAUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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