miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17099 3' -54.6 NC_004333.2 + 29715 0.66 0.706891
Target:  5'- aGGAACAGGUCAUgaGCGCUgcGGAauUCUg- -3'
miRNA:   3'- gUCUUGUCCAGUG--CGCGG--UCU--GGAac -5'
17099 3' -54.6 NC_004333.2 + 44938 0.66 0.706891
Target:  5'- -cGGGCAGGuugUCGCGCGCgGcGAUCUUc -3'
miRNA:   3'- guCUUGUCC---AGUGCGCGgU-CUGGAAc -5'
17099 3' -54.6 NC_004333.2 + 23488 0.67 0.64004
Target:  5'- cCGGcGGCGGG-UACGUGCCGGGCUa-- -3'
miRNA:   3'- -GUC-UUGUCCaGUGCGCGGUCUGGaac -5'
17099 3' -54.6 NC_004333.2 + 9975 0.67 0.606361
Target:  5'- uGGGAC-GGUCACGCGaucGACCUa- -3'
miRNA:   3'- gUCUUGuCCAGUGCGCgguCUGGAac -5'
17099 3' -54.6 NC_004333.2 + 32740 0.67 0.605241
Target:  5'- gCAGAacgucacgcGCAGGUCGCuGcCGCCGGccauaagcgcggcACCUUGc -3'
miRNA:   3'- -GUCU---------UGUCCAGUG-C-GCGGUC-------------UGGAAC- -5'
17099 3' -54.6 NC_004333.2 + 47724 0.68 0.584007
Target:  5'- --cGGCAcGUCGCGCGCCGuGGCCUc- -3'
miRNA:   3'- gucUUGUcCAGUGCGCGGU-CUGGAac -5'
17099 3' -54.6 NC_004333.2 + 14825 0.68 0.561819
Target:  5'- -cGAGCAGGUCAUuCGC-AGACCa-- -3'
miRNA:   3'- guCUUGUCCAGUGcGCGgUCUGGaac -5'
17099 3' -54.6 NC_004333.2 + 9931 0.72 0.343917
Target:  5'- -cGAGCAGGUCGcCGCGCaGGugUUUGc -3'
miRNA:   3'- guCUUGUCCAGU-GCGCGgUCugGAAC- -5'
17099 3' -54.6 NC_004333.2 + 37773 0.74 0.272574
Target:  5'- -cGAGCAGGccauugagccgcCACGCGCCGGGCCg-- -3'
miRNA:   3'- guCUUGUCCa-----------GUGCGCGGUCUGGaac -5'
17099 3' -54.6 NC_004333.2 + 41743 0.74 0.266966
Target:  5'- uCGGcGCGGGcgacUCGCGCGCCGGGCUaUGg -3'
miRNA:   3'- -GUCuUGUCC----AGUGCGCGGUCUGGaAC- -5'
17099 3' -54.6 NC_004333.2 + 45813 0.75 0.246764
Target:  5'- cCAGAcccaAGGUCugGCGCguGACCUg- -3'
miRNA:   3'- -GUCUug--UCCAGugCGCGguCUGGAac -5'
17099 3' -54.6 NC_004333.2 + 3283 0.78 0.14261
Target:  5'- uCGGGGCGGGcgGCGCGCCGGGCCg-- -3'
miRNA:   3'- -GUCUUGUCCagUGCGCGGUCUGGaac -5'
17099 3' -54.6 NC_004333.2 + 45893 1.09 0.00091
Target:  5'- cCAGAACAGGUCACGCGCCAGACCUUGg -3'
miRNA:   3'- -GUCUUGUCCAGUGCGCGGUCUGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.