miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17100 5' -64.4 NC_004333.2 + 19718 0.66 0.271685
Target:  5'- gCUCGGCGCUG-GUGGCGuGCaa-GACg -3'
miRNA:   3'- -GAGCCGCGGCuCACCGUcCGgccCUG- -5'
17100 5' -64.4 NC_004333.2 + 30603 0.66 0.265163
Target:  5'- --aGGCGCuCGAGUGG--GGauGGGACa -3'
miRNA:   3'- gagCCGCG-GCUCACCguCCggCCCUG- -5'
17100 5' -64.4 NC_004333.2 + 43381 0.66 0.264518
Target:  5'- -cCGGCGUCGGcucgaucGGCAcgagcgcauagccGGCCGGGAUc -3'
miRNA:   3'- gaGCCGCGGCUca-----CCGU-------------CCGGCCCUG- -5'
17100 5' -64.4 NC_004333.2 + 38247 0.66 0.24575
Target:  5'- uCUCGGCgGCCauugcGAGcGGCGugccaagaucggcGGCCGGGuCg -3'
miRNA:   3'- -GAGCCG-CGG-----CUCaCCGU-------------CCGGCCCuG- -5'
17100 5' -64.4 NC_004333.2 + 9121 0.67 0.223019
Target:  5'- aUCGGCGUCGAcGUGucGCAGGUCGccaaaGGCa -3'
miRNA:   3'- gAGCCGCGGCU-CAC--CGUCCGGCc----CUG- -5'
17100 5' -64.4 NC_004333.2 + 48080 0.68 0.186708
Target:  5'- gCUCGGUGCCGAcgagGcGCAGGCgGcaaccGGGCg -3'
miRNA:   3'- -GAGCCGCGGCUca--C-CGUCCGgC-----CCUG- -5'
17100 5' -64.4 NC_004333.2 + 6670 0.68 0.177334
Target:  5'- -gCGGCGCUGGGcGGCGcGCCGuGGCg -3'
miRNA:   3'- gaGCCGCGGCUCaCCGUcCGGCcCUG- -5'
17100 5' -64.4 NC_004333.2 + 20572 0.69 0.168381
Target:  5'- -gCGGCgGCCGgcagcGGUugcgcGGCAGccGCCGGGACg -3'
miRNA:   3'- gaGCCG-CGGC-----UCA-----CCGUC--CGGCCCUG- -5'
17100 5' -64.4 NC_004333.2 + 35442 0.7 0.126043
Target:  5'- uCUCGGUGCCGucaGGC-GGCUugGGGGCg -3'
miRNA:   3'- -GAGCCGCGGCucaCCGuCCGG--CCCUG- -5'
17100 5' -64.4 NC_004333.2 + 14713 0.7 0.126043
Target:  5'- --aGuGCGCCaAGcGGCAGGUCGGGAUu -3'
miRNA:   3'- gagC-CGCGGcUCaCCGUCCGGCCCUG- -5'
17100 5' -64.4 NC_004333.2 + 20654 0.75 0.055645
Target:  5'- -aCGGCGCUGcgccAGUGGCAGGaggcgcaCGGGAUg -3'
miRNA:   3'- gaGCCGCGGC----UCACCGUCCg------GCCCUG- -5'
17100 5' -64.4 NC_004333.2 + 30048 0.76 0.047102
Target:  5'- gCUCGGCGCCG-GUGGCAgcgcGGCCGcgcucGGCa -3'
miRNA:   3'- -GAGCCGCGGCuCACCGU----CCGGCc----CUG- -5'
17100 5' -64.4 NC_004333.2 + 45998 0.77 0.040971
Target:  5'- aCUCGGCGCCGAG-GGCuGGCaCGGccuGCg -3'
miRNA:   3'- -GAGCCGCGGCUCaCCGuCCG-GCCc--UG- -5'
17100 5' -64.4 NC_004333.2 + 46059 1.09 0.000114
Target:  5'- cCUCGGCGCCGAGUGGCAGGCCGGGACa -3'
miRNA:   3'- -GAGCCGCGGCUCACCGUCCGGCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.