miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17101 5' -54 NC_004333.2 + 39410 0.65 0.799711
Target:  5'- --gCCugCGGUgcgucguagaagCGCGCCGcCGCCGa -3'
miRNA:   3'- ccaGGugGCUAaa----------GCGUGGUaGCGGC- -5'
17101 5' -54 NC_004333.2 + 37078 0.66 0.793862
Target:  5'- gGGUuuGCgCGGaUUCGCGCUAUCGaggaCGu -3'
miRNA:   3'- -CCAggUG-GCUaAAGCGUGGUAGCg---GC- -5'
17101 5' -54 NC_004333.2 + 36287 0.66 0.789929
Target:  5'- cGUCCugCGccaugcgauaCGCGCCGcccgaguagUCGCCGg -3'
miRNA:   3'- cCAGGugGCuaaa------GCGUGGU---------AGCGGC- -5'
17101 5' -54 NC_004333.2 + 38402 0.66 0.783979
Target:  5'- cGGUCgGCaCGcccucgaggcgcAUUUCGC-CgGUCGCCGc -3'
miRNA:   3'- -CCAGgUG-GC------------UAAAGCGuGgUAGCGGC- -5'
17101 5' -54 NC_004333.2 + 26371 0.66 0.773936
Target:  5'- cGUCgACCGGcUUUCGCAUCGaCGgCGc -3'
miRNA:   3'- cCAGgUGGCU-AAAGCGUGGUaGCgGC- -5'
17101 5' -54 NC_004333.2 + 9670 0.66 0.763745
Target:  5'- --aCCgGCCGAUgcCGCGCCGgcuggCGCUGa -3'
miRNA:   3'- ccaGG-UGGCUAaaGCGUGGUa----GCGGC- -5'
17101 5' -54 NC_004333.2 + 35021 0.66 0.753417
Target:  5'- cGGUCgCGCCGAa----CACCAUCGgCGu -3'
miRNA:   3'- -CCAG-GUGGCUaaagcGUGGUAGCgGC- -5'
17101 5' -54 NC_004333.2 + 36823 0.66 0.753417
Target:  5'- --gCCGUCGAgugCGCgcuacgGCCAUCGCCGg -3'
miRNA:   3'- ccaGGUGGCUaaaGCG------UGGUAGCGGC- -5'
17101 5' -54 NC_004333.2 + 28315 0.66 0.750294
Target:  5'- cGGUCggcaaagucguaauCACCGAacaugcgcaUCGUACCAUCGCg- -3'
miRNA:   3'- -CCAG--------------GUGGCUaa-------AGCGUGGUAGCGgc -5'
17101 5' -54 NC_004333.2 + 30673 0.67 0.742964
Target:  5'- -uUCaugaaGCCG--UUCGCGCCGcCGCCGg -3'
miRNA:   3'- ccAGg----UGGCuaAAGCGUGGUaGCGGC- -5'
17101 5' -54 NC_004333.2 + 39786 0.67 0.742964
Target:  5'- -aUCCgACCGAcgccgcUCGCGCUGUgGCCGu -3'
miRNA:   3'- ccAGG-UGGCUaa----AGCGUGGUAgCGGC- -5'
17101 5' -54 NC_004333.2 + 2743 0.67 0.742964
Target:  5'- cGUCacaGCCGAgaUCGCGgCCGccgUGCCGg -3'
miRNA:   3'- cCAGg--UGGCUaaAGCGU-GGUa--GCGGC- -5'
17101 5' -54 NC_004333.2 + 47568 0.67 0.736637
Target:  5'- uGGUCgCGCCGGccg-GCGCCucguucagcgcggcaGUCGCCGc -3'
miRNA:   3'- -CCAG-GUGGCUaaagCGUGG---------------UAGCGGC- -5'
17101 5' -54 NC_004333.2 + 7924 0.67 0.732398
Target:  5'- gGGUa-GuuGAUaUUCGCGCCGcugUCGCCGu -3'
miRNA:   3'- -CCAggUggCUA-AAGCGUGGU---AGCGGC- -5'
17101 5' -54 NC_004333.2 + 3383 0.67 0.732398
Target:  5'- uGUCgACCGg---CGuCGCCGUCGUCGc -3'
miRNA:   3'- cCAGgUGGCuaaaGC-GUGGUAGCGGC- -5'
17101 5' -54 NC_004333.2 + 24374 0.67 0.732398
Target:  5'- cGGUCgCgGCUGuuccaggUCGCGCaGUCGCCGg -3'
miRNA:   3'- -CCAG-G-UGGCuaa----AGCGUGgUAGCGGC- -5'
17101 5' -54 NC_004333.2 + 20004 0.67 0.732398
Target:  5'- cGGcUCGCCGcccggCGCGCuCGUCGUCGa -3'
miRNA:   3'- -CCaGGUGGCuaaa-GCGUG-GUAGCGGC- -5'
17101 5' -54 NC_004333.2 + 12393 0.67 0.732398
Target:  5'- --cCCGCCcgg--CGCGCCAgugUCGCCGc -3'
miRNA:   3'- ccaGGUGGcuaaaGCGUGGU---AGCGGC- -5'
17101 5' -54 NC_004333.2 + 11874 0.67 0.726009
Target:  5'- cGGUCgGCCGAaacgggcgcgaGCACCuuGUCGUCGc -3'
miRNA:   3'- -CCAGgUGGCUaaag-------CGUGG--UAGCGGC- -5'
17101 5' -54 NC_004333.2 + 27802 0.67 0.72173
Target:  5'- uGUCCGCCGAguagUCG-ACCAcgaagccaGCCGg -3'
miRNA:   3'- cCAGGUGGCUaa--AGCgUGGUag------CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.