miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17102 3' -61.3 NC_004333.2 + 20057 0.66 0.424157
Target:  5'- uUGGauucaGUGgAUGAGGCCgACaGCGCGCa -3'
miRNA:   3'- gGCCc----CACaUGCUCCGG-UGcCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 31216 0.66 0.423249
Target:  5'- gCCGGuuGGUcaugccgGUcGCGAcGGCCgcGCGGCGCaGCg -3'
miRNA:   3'- -GGCC--CCA-------CA-UGCU-CCGG--UGCCGCG-CG- -5'
17102 3' -61.3 NC_004333.2 + 23489 0.66 0.415132
Target:  5'- gCCGGcGGcggGUACGugccGGGCUaccaguACGGCGUGa -3'
miRNA:   3'- -GGCC-CCa--CAUGC----UCCGG------UGCCGCGCg -5'
17102 3' -61.3 NC_004333.2 + 906 0.66 0.415132
Target:  5'- -aGGGGUGUugGucGGCauuGCGcccucguaGCGUGCg -3'
miRNA:   3'- ggCCCCACAugCu-CCGg--UGC--------CGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 20692 0.66 0.400939
Target:  5'- gCCGGauggcGUGUACGGaucgcagacgaaugcGGUgaugACGGCGCGCg -3'
miRNA:   3'- -GGCCc----CACAUGCU---------------CCGg---UGCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 40469 0.66 0.397439
Target:  5'- aCGGGGcUGcaGCG-GGCUACGGUaGUGUg -3'
miRNA:   3'- gGCCCC-ACa-UGCuCCGGUGCCG-CGCG- -5'
17102 3' -61.3 NC_004333.2 + 37748 0.67 0.380239
Target:  5'- gCCGGGccGgccgACGAgcgGGUCG-GGCGCGCg -3'
miRNA:   3'- -GGCCCcaCa---UGCU---CCGGUgCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 18600 0.67 0.35458
Target:  5'- cCCGGGuUGccgccggcUGCGaAGGCCGCugcagcguccgucGGCGUGCc -3'
miRNA:   3'- -GGCCCcAC--------AUGC-UCCGGUG-------------CCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 30514 0.67 0.347363
Target:  5'- aCGGuGaaacagacGUGgcGCGAGGCagucgcUACGGCGCGCg -3'
miRNA:   3'- gGCC-C--------CACa-UGCUCCG------GUGCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 38688 0.67 0.347363
Target:  5'- aCGGGcaccACG-GGCaGCGGCGCGCc -3'
miRNA:   3'- gGCCCcacaUGCuCCGgUGCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 47845 0.68 0.331704
Target:  5'- uUGGaGGUGagcAUGuGGCU-CGGCGCGCu -3'
miRNA:   3'- gGCC-CCACa--UGCuCCGGuGCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 3165 0.68 0.330935
Target:  5'- aCCGGGuugcacggacGUauccugcgugagcACGAGGCCGgugagccggccCGGCGCGCc -3'
miRNA:   3'- -GGCCCca--------CA-------------UGCUCCGGU-----------GCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 23723 0.68 0.301963
Target:  5'- gCCGGcGGcGUuccgccucaagGCGAGGaCUucaACGGCGCGUu -3'
miRNA:   3'- -GGCC-CCaCA-----------UGCUCC-GG---UGCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 3293 0.7 0.242663
Target:  5'- cCCGGcGUcauCGGGGCgGgCGGCGCGCc -3'
miRNA:   3'- -GGCCcCAcauGCUCCGgU-GCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 41290 0.7 0.230876
Target:  5'- -aGGGcGgcgacuucgACGAGGCCGagcucgccCGGCGCGCg -3'
miRNA:   3'- ggCCC-Caca------UGCUCCGGU--------GCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 25111 0.71 0.208752
Target:  5'- uCCGGGcacgGCGAGcaCgGCGGCGCGCa -3'
miRNA:   3'- -GGCCCcacaUGCUCc-GgUGCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 13350 0.71 0.198391
Target:  5'- uUCGGcacGGUGUACGGgcgcGGCacgaGCGGCGUGUc -3'
miRNA:   3'- -GGCC---CCACAUGCU----CCGg---UGCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 47979 0.71 0.183691
Target:  5'- aUCGGcGGUGUGCGGcuGuGCUAcauCGGCGCGUu -3'
miRNA:   3'- -GGCC-CCACAUGCU--C-CGGU---GCCGCGCG- -5'
17102 3' -61.3 NC_004333.2 + 12444 0.72 0.17901
Target:  5'- gCGGGGcGcggGCGGGcGCUACGGCGCc- -3'
miRNA:   3'- gGCCCCaCa--UGCUC-CGGUGCCGCGcg -5'
17102 3' -61.3 NC_004333.2 + 39306 0.76 0.09177
Target:  5'- cCCGGGGcUGgcagcCGAuucgcucGGCgGCGGCGCGCu -3'
miRNA:   3'- -GGCCCC-ACau---GCU-------CCGgUGCCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.