miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17102 5' -50.1 NC_004333.2 + 37869 0.66 0.939198
Target:  5'- cGAGCccgaggccgGUGAGCGCUUCGgccugcucgcgauUCGcGCUcUCGg -3'
miRNA:   3'- -CUCG---------CACUUGCGAAGC-------------AGCaUGA-AGC- -5'
17102 5' -50.1 NC_004333.2 + 48041 0.66 0.938132
Target:  5'- uGGGCGcUGGugGUUUgugcucaugcgcgaUGUCGUGCUgcUCGg -3'
miRNA:   3'- -CUCGC-ACUugCGAA--------------GCAGCAUGA--AGC- -5'
17102 5' -50.1 NC_004333.2 + 37194 0.66 0.928594
Target:  5'- cGGCGUGAGCGCUUCGa--------- -3'
miRNA:   3'- cUCGCACUUGCGAAGCagcaugaagc -5'
17102 5' -50.1 NC_004333.2 + 41894 0.66 0.92258
Target:  5'- -cGCGgccGGGCGC--CGUCGUGCcgUCGg -3'
miRNA:   3'- cuCGCa--CUUGCGaaGCAGCAUGa-AGC- -5'
17102 5' -50.1 NC_004333.2 + 22428 0.67 0.888067
Target:  5'- -cGCGUGcGGCGCagguUUCGUCG-GCUUCc -3'
miRNA:   3'- cuCGCAC-UUGCG----AAGCAGCaUGAAGc -5'
17102 5' -50.1 NC_004333.2 + 17542 0.68 0.863942
Target:  5'- cAGCGUGAGCGCgg---CGgcCUUCGc -3'
miRNA:   3'- cUCGCACUUGCGaagcaGCauGAAGC- -5'
17102 5' -50.1 NC_004333.2 + 18179 0.71 0.724796
Target:  5'- cGGCGUGccgggugauGCGC-UCGUCGUGCgcgCGg -3'
miRNA:   3'- cUCGCACu--------UGCGaAGCAGCAUGaa-GC- -5'
17102 5' -50.1 NC_004333.2 + 7431 0.72 0.645731
Target:  5'- -uGCGUgcgcacuccaucGAGCGUUacUCGUCGUACUUCc -3'
miRNA:   3'- cuCGCA------------CUUGCGA--AGCAGCAUGAAGc -5'
17102 5' -50.1 NC_004333.2 + 11878 0.72 0.634286
Target:  5'- -cGCGcUGAugGCcgCGUCGUACUUgCGc -3'
miRNA:   3'- cuCGC-ACUugCGaaGCAGCAUGAA-GC- -5'
17102 5' -50.1 NC_004333.2 + 42209 0.76 0.427022
Target:  5'- cGGGCGUGAGCGUcaUGUCGUGCacCGg -3'
miRNA:   3'- -CUCGCACUUGCGaaGCAGCAUGaaGC- -5'
17102 5' -50.1 NC_004333.2 + 47769 1.09 0.003175
Target:  5'- cGAGCGUGAACGCUUCGUCGUACUUCGc -3'
miRNA:   3'- -CUCGCACUUGCGAAGCAGCAUGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.