miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17103 3' -57 NC_004333.2 + 20518 0.69 0.417589
Target:  5'- gCCGccGccGCGCCGcUCGCuGGCGGc -3'
miRNA:   3'- aGGUuuCuuCGCGGCaGGCGuCCGCC- -5'
17103 3' -57 NC_004333.2 + 9239 0.72 0.264587
Target:  5'- gCCGAacGGggGCGCCucgCCGCGuGCGGc -3'
miRNA:   3'- aGGUU--UCuuCGCGGca-GGCGUcCGCC- -5'
17103 3' -57 NC_004333.2 + 3942 0.73 0.245051
Target:  5'- aCCGGcAGGuuGGCGCCGuUCUGCAGGUaGGa -3'
miRNA:   3'- aGGUU-UCU--UCGCGGC-AGGCGUCCG-CC- -5'
17103 3' -57 NC_004333.2 + 42839 0.75 0.164718
Target:  5'- gUCCGAAGAAgcccGCGCCGcaUCUGCcagugagacggGGGCGGa -3'
miRNA:   3'- -AGGUUUCUU----CGCGGC--AGGCG-----------UCCGCC- -5'
17103 3' -57 NC_004333.2 + 14853 0.66 0.591799
Target:  5'- gCCGAucAGAAuGaCGCCGgagagcugCUGCAGGCGc -3'
miRNA:   3'- aGGUU--UCUU-C-GCGGCa-------GGCGUCCGCc -5'
17103 3' -57 NC_004333.2 + 39306 0.67 0.559374
Target:  5'- cCCGGGGcuGGCaGCCGaUUCGCucGGCGGc -3'
miRNA:   3'- aGGUUUCu-UCG-CGGC-AGGCGu-CCGCC- -5'
17103 3' -57 NC_004333.2 + 11645 0.7 0.389206
Target:  5'- gUCGAAGuAGCGCUgccaguaGUCgCGCAGGCGc -3'
miRNA:   3'- aGGUUUCuUCGCGG-------CAG-GCGUCCGCc -5'
17103 3' -57 NC_004333.2 + 46324 0.66 0.617967
Target:  5'- gUCGAAGAucgacugaacgagcgGGCGCCGUuaugcgCCGCu-GCGGa -3'
miRNA:   3'- aGGUUUCU---------------UCGCGGCA------GGCGucCGCC- -5'
17103 3' -57 NC_004333.2 + 1622 0.66 0.613598
Target:  5'- aUCCGGGucGAAuGCGUCGUCgGC-GGCGu -3'
miRNA:   3'- -AGGUUU--CUU-CGCGGCAGgCGuCCGCc -5'
17103 3' -57 NC_004333.2 + 26771 0.67 0.538032
Target:  5'- cUCCGAAGuaaaaGCCGUCUGCcgacgaguAGGCGc -3'
miRNA:   3'- -AGGUUUCuucg-CGGCAGGCG--------UCCGCc -5'
17103 3' -57 NC_004333.2 + 30681 0.68 0.475923
Target:  5'- gCCGuuc--GCGCCG-CCGCcGGCGGc -3'
miRNA:   3'- aGGUuucuuCGCGGCaGGCGuCCGCC- -5'
17103 3' -57 NC_004333.2 + 22381 0.67 0.516976
Target:  5'- gCCGAGGAuG-GCCGUCUGcCAGGuCGa -3'
miRNA:   3'- aGGUUUCUuCgCGGCAGGC-GUCC-GCc -5'
17103 3' -57 NC_004333.2 + 41430 0.66 0.613598
Target:  5'- aUCGAAcAGGCGCUGcucgaCGCGGGCGa -3'
miRNA:   3'- aGGUUUcUUCGCGGCag---GCGUCCGCc -5'
17103 3' -57 NC_004333.2 + 43063 0.67 0.559374
Target:  5'- gCCAucGGucgagAGCGCCGcccgcucgUCCGCcGGCGa -3'
miRNA:   3'- aGGUuuCU-----UCGCGGC--------AGGCGuCCGCc -5'
17103 3' -57 NC_004333.2 + 46435 0.67 0.538032
Target:  5'- gUCCuAGGccGCGCCaaaUCCGCAG-CGGc -3'
miRNA:   3'- -AGGuUUCuuCGCGGc--AGGCGUCcGCC- -5'
17103 3' -57 NC_004333.2 + 30769 0.73 0.238811
Target:  5'- uUCCAGGacGAAGuUGCCG-CCGCcGGCGGc -3'
miRNA:   3'- -AGGUUU--CUUC-GCGGCaGGCGuCCGCC- -5'
17103 3' -57 NC_004333.2 + 27323 0.72 0.264587
Target:  5'- gUCCGAAuacGAGGCGUCGg-CGCAGGCa- -3'
miRNA:   3'- -AGGUUU---CUUCGCGGCagGCGUCCGcc -5'
17103 3' -57 NC_004333.2 + 12472 0.7 0.351988
Target:  5'- gCCGAAGGcggcgacacuggcGCGCCGggcggggCGCGGGCGGg -3'
miRNA:   3'- aGGUUUCUu------------CGCGGCag-----GCGUCCGCC- -5'
17103 3' -57 NC_004333.2 + 14335 0.69 0.399132
Target:  5'- cUCGAAGgcGUGCCG-CCGCuGGCu- -3'
miRNA:   3'- aGGUUUCuuCGCGGCaGGCGuCCGcc -5'
17103 3' -57 NC_004333.2 + 24296 0.67 0.526412
Target:  5'- cCUggGGGcaAGCGCCGUUUuacggcgGcCAGGCGGc -3'
miRNA:   3'- aGGuuUCU--UCGCGGCAGG-------C-GUCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.