miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17104 3' -54.8 NC_004333.2 + 9690 0.66 0.719754
Target:  5'- nCGCcGGCaGCCGGUGCgCAACcggccgaugccGCGCCg -3'
miRNA:   3'- -GUGuUUGgUGGUCGCGgGUUG-----------UGCGG- -5'
17104 3' -54.8 NC_004333.2 + 17393 0.66 0.719754
Target:  5'- gCGCAucgagcuGCuCGCgCAGCGCggucaCGACGCGCUg -3'
miRNA:   3'- -GUGUu------UG-GUG-GUCGCGg----GUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 23660 0.66 0.719754
Target:  5'- gGCGGaacGCCGCCGGCcUCCGGCG-GCUg -3'
miRNA:   3'- gUGUU---UGGUGGUCGcGGGUUGUgCGG- -5'
17104 3' -54.8 NC_004333.2 + 28840 0.66 0.719754
Target:  5'- aCACAucguGCCGgCuGCGUucguagCCGGCGCGCUc -3'
miRNA:   3'- -GUGUu---UGGUgGuCGCG------GGUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 30111 0.66 0.719754
Target:  5'- gCGCGAcCCGCgcaacuggaAGaUGCCCuGCGCGCCu -3'
miRNA:   3'- -GUGUUuGGUGg--------UC-GCGGGuUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 39655 0.66 0.719754
Target:  5'- aCGCGAACUucaCGGuCGCCgaggCGGCGCGCUu -3'
miRNA:   3'- -GUGUUUGGug-GUC-GCGG----GUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 45076 0.66 0.719754
Target:  5'- -uCGAGCgGCCGGa---CAGCGCGCCg -3'
miRNA:   3'- guGUUUGgUGGUCgcggGUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 38681 0.66 0.719754
Target:  5'- cCACGGGCaGCgGcGCGCCCGGCuguagcugGCGCUu -3'
miRNA:   3'- -GUGUUUGgUGgU-CGCGGGUUG--------UGCGG- -5'
17104 3' -54.8 NC_004333.2 + 25378 0.66 0.719754
Target:  5'- uCGCGGcagUCGCCGGCgucgGCCCGguuGCgACGCCg -3'
miRNA:   3'- -GUGUUu--GGUGGUCG----CGGGU---UG-UGCGG- -5'
17104 3' -54.8 NC_004333.2 + 22160 0.66 0.715414
Target:  5'- gACGGucGCCaACCugGGCGCCUcuuuccuggcgcuACGCGCCg -3'
miRNA:   3'- gUGUU--UGG-UGG--UCGCGGGu------------UGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 21101 0.66 0.71324
Target:  5'- uCACGAacGCCgucggucugauguucGCgAGCGCCCugaacgAGCGCGCg -3'
miRNA:   3'- -GUGUU--UGG---------------UGgUCGCGGG------UUGUGCGg -5'
17104 3' -54.8 NC_004333.2 + 9534 0.66 0.70888
Target:  5'- gGCGGugCggcACCcGCGCCUggUGCGCa -3'
miRNA:   3'- gUGUUugG---UGGuCGCGGGuuGUGCGg -5'
17104 3' -54.8 NC_004333.2 + 40187 0.66 0.70888
Target:  5'- gGCGAucauCCGCCGauuccCGCUUGGCACGCUg -3'
miRNA:   3'- gUGUUu---GGUGGUc----GCGGGUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 28879 0.66 0.70888
Target:  5'- gCGCucguGCCGCgCGaucGCGCUCGGCGCagGCCg -3'
miRNA:   3'- -GUGuu--UGGUG-GU---CGCGGGUUGUG--CGG- -5'
17104 3' -54.8 NC_004333.2 + 37922 0.66 0.70888
Target:  5'- aCGCAAACUGCCuGCGUCgugggaaguGCACGUg -3'
miRNA:   3'- -GUGUUUGGUGGuCGCGGgu-------UGUGCGg -5'
17104 3' -54.8 NC_004333.2 + 35029 0.66 0.70888
Target:  5'- -cCGAacACCAUCGGCGU--GACGCGCUg -3'
miRNA:   3'- guGUU--UGGUGGUCGCGggUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 8781 0.66 0.70888
Target:  5'- gGCGAAgUCGCCGGCaauGCCUu--GCGCCg -3'
miRNA:   3'- gUGUUU-GGUGGUCG---CGGGuugUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 11890 0.66 0.70888
Target:  5'- gCGCGAG-CACCuugucgucGCgGCCCGGCAUGCg -3'
miRNA:   3'- -GUGUUUgGUGGu-------CG-CGGGUUGUGCGg -5'
17104 3' -54.8 NC_004333.2 + 1721 0.66 0.70888
Target:  5'- ---cGACCGCgCAGCGCauuCAGggcUACGCCg -3'
miRNA:   3'- guguUUGGUG-GUCGCGg--GUU---GUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 21172 0.66 0.707788
Target:  5'- aCAuCAGACCGaCGGCGUUCGugaagccGCACGUCg -3'
miRNA:   3'- -GU-GUUUGGUgGUCGCGGGU-------UGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.