miRNA display CGI


Results 1 - 20 of 285 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17104 3' -54.8 NC_004333.2 + 29978 0.8 0.114399
Target:  5'- cCGCGcuGCCACCGGCGCCgAGCgcgagcaccaugcgGCGCCg -3'
miRNA:   3'- -GUGUu-UGGUGGUCGCGGgUUG--------------UGCGG- -5'
17104 3' -54.8 NC_004333.2 + 17293 0.72 0.36414
Target:  5'- aCGCcGGCCgGCgCAGCGUCCucGACAUGCCc -3'
miRNA:   3'- -GUGuUUGG-UG-GUCGCGGG--UUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 29040 0.72 0.37296
Target:  5'- gCGCGAG-CACCGcGcCGCCCAcgauCGCGCCg -3'
miRNA:   3'- -GUGUUUgGUGGU-C-GCGGGUu---GUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 39655 0.66 0.719754
Target:  5'- aCGCGAACUucaCGGuCGCCgaggCGGCGCGCUu -3'
miRNA:   3'- -GUGUUUGGug-GUC-GCGG----GUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 12378 0.75 0.230522
Target:  5'- aGCGc-CCGCCcGCGCCCcgcccGGCGCGCCa -3'
miRNA:   3'- gUGUuuGGUGGuCGCGGG-----UUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 13033 0.75 0.243051
Target:  5'- gCGCGAGguCCAUCaAGaUGCCCGACACGCUg -3'
miRNA:   3'- -GUGUUU--GGUGG-UC-GCGGGUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 30400 0.74 0.256142
Target:  5'- --gAAGCgACCGGCGCCgGaccgaauucGCGCGCCg -3'
miRNA:   3'- gugUUUGgUGGUCGCGGgU---------UGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 33401 0.74 0.262901
Target:  5'- gGCGAuGCCugCGGCGCagcgaCuGCGCGCCg -3'
miRNA:   3'- gUGUU-UGGugGUCGCGg----GuUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 2684 0.74 0.284049
Target:  5'- uGCAGcgucgcGCCGgCGGCGgCCGACAgGCCg -3'
miRNA:   3'- gUGUU------UGGUgGUCGCgGGUUGUgCGG- -5'
17104 3' -54.8 NC_004333.2 + 38935 0.72 0.355465
Target:  5'- gACGAACCACgAcGCGaCCGGCAauCGCCg -3'
miRNA:   3'- gUGUUUGGUGgU-CGCgGGUUGU--GCGG- -5'
17104 3' -54.8 NC_004333.2 + 27820 0.72 0.338557
Target:  5'- cCACgAAGCCAgCCGGCGUgcagaucgcuuUCAGCACGUCg -3'
miRNA:   3'- -GUG-UUUGGU-GGUCGCG-----------GGUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 19949 0.74 0.276854
Target:  5'- gGCGAGCCGCCGcgaguGCuuuGCCCGacuGCGCGCUg -3'
miRNA:   3'- gUGUUUGGUGGU-----CG---CGGGU---UGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 18870 0.77 0.166385
Target:  5'- aCGCAuuGCCGCCggGGCGCCCAGaACGCa -3'
miRNA:   3'- -GUGUu-UGGUGG--UCGCGGGUUgUGCGg -5'
17104 3' -54.8 NC_004333.2 + 44187 0.72 0.346938
Target:  5'- uCACGuuCCGCC--UGCCCGGCAUGUCg -3'
miRNA:   3'- -GUGUuuGGUGGucGCGGGUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 11810 0.77 0.18576
Target:  5'- gUACGAcgcgGCCAUCAGCGCgaCGGCGCGCUc -3'
miRNA:   3'- -GUGUU----UGGUGGUCGCGg-GUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 38596 0.74 0.276854
Target:  5'- --uGAAgCGCCAGCuacaGCCgGGCGCGCCg -3'
miRNA:   3'- gugUUUgGUGGUCG----CGGgUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 28625 0.72 0.346938
Target:  5'- -cCGAugUACCagcucgcugaugAGCGCCCAAguCGCCg -3'
miRNA:   3'- guGUUugGUGG------------UCGCGGGUUguGCGG- -5'
17104 3' -54.8 NC_004333.2 + 6589 0.72 0.36414
Target:  5'- cCGCAucGCCGCCacGGCGCgCCGcccaGCGCCg -3'
miRNA:   3'- -GUGUu-UGGUGG--UCGCG-GGUug--UGCGG- -5'
17104 3' -54.8 NC_004333.2 + 3194 0.75 0.224464
Target:  5'- gCACGAG--GCCGGUgagccgGCCCGGCGCGCCg -3'
miRNA:   3'- -GUGUUUggUGGUCG------CGGGUUGUGCGG- -5'
17104 3' -54.8 NC_004333.2 + 25421 0.75 0.249526
Target:  5'- aGCGuGCCGgCGGCGgCCGuCACGCCg -3'
miRNA:   3'- gUGUuUGGUgGUCGCgGGUuGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.