miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17105 3' -50.2 NC_004333.2 + 30526 0.71 0.745522
Target:  5'- gCCGUGAcgucgACgGUGAAacagacgugGCGCGAGGCagucgcuACGGc -3'
miRNA:   3'- -GGCACU-----UG-CACUU---------UGCGUUCCG-------UGCC- -5'
17105 3' -50.2 NC_004333.2 + 31377 0.68 0.88651
Target:  5'- gCCGUGcucGGCGUc-GGCGC-AGGUGCGGc -3'
miRNA:   3'- -GGCAC---UUGCAcuUUGCGuUCCGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 32487 0.77 0.383168
Target:  5'- cUCGUcAGCGaGcuGCGCGAGGCGCGGg -3'
miRNA:   3'- -GGCAcUUGCaCuuUGCGUUCCGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 33831 0.69 0.827108
Target:  5'- aUCGUGAACGUGAc-----GGGCACGa -3'
miRNA:   3'- -GGCACUUGCACUuugcguUCCGUGCc -5'
17105 3' -50.2 NC_004333.2 + 35490 0.68 0.878789
Target:  5'- gCCgGUGAGCGUGccGCcuGCGAgcGGCACGu -3'
miRNA:   3'- -GG-CACUUGCACuuUG--CGUU--CCGUGCc -5'
17105 3' -50.2 NC_004333.2 + 38613 0.68 0.88651
Target:  5'- gCCGUGAGCGcgucgGAcggcAACGCGucGCACa- -3'
miRNA:   3'- -GGCACUUGCa----CU----UUGCGUucCGUGcc -5'
17105 3' -50.2 NC_004333.2 + 38970 0.73 0.613097
Target:  5'- gCCGUGccgaucAGCGcGAAgcgGCGCGGGuGCGCGGa -3'
miRNA:   3'- -GGCAC------UUGCaCUU---UGCGUUC-CGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 41328 0.71 0.746591
Target:  5'- gCGaUGGACGUGAcGCGCGAGuguGUACGu -3'
miRNA:   3'- gGC-ACUUGCACUuUGCGUUC---CGUGCc -5'
17105 3' -50.2 NC_004333.2 + 42011 0.76 0.440618
Target:  5'- uCgGUGcGCGUGAAGCGCGcGGCcaacgaGCGGg -3'
miRNA:   3'- -GgCACuUGCACUUUGCGUuCCG------UGCC- -5'
17105 3' -50.2 NC_004333.2 + 42092 0.67 0.908009
Target:  5'- gUCGUGcugcgcgacgaGGCGUGu--CGCGAGGUGCGc -3'
miRNA:   3'- -GGCAC-----------UUGCACuuuGCGUUCCGUGCc -5'
17105 3' -50.2 NC_004333.2 + 43061 0.67 0.920297
Target:  5'- aCCGacgccGAACGUGAcgccgcacaucgaGACGCGAucaacgaguaucGGCGCGa -3'
miRNA:   3'- -GGCa----CUUGCACU-------------UUGCGUU------------CCGUGCc -5'
17105 3' -50.2 NC_004333.2 + 43262 0.72 0.669515
Target:  5'- gCCaGUGAGaCG-GggGCGCAAGGgGCGc -3'
miRNA:   3'- -GG-CACUU-GCaCuuUGCGUUCCgUGCc -5'
17105 3' -50.2 NC_004333.2 + 44254 0.73 0.590578
Target:  5'- gCCGggcaggcgGAACGUGAAACaGUAGGcGCGCGu -3'
miRNA:   3'- -GGCa-------CUUGCACUUUG-CGUUC-CGUGCc -5'
17105 3' -50.2 NC_004333.2 + 48158 0.68 0.878789
Target:  5'- aCGU--AUGUGAGGCGCGAGaacgcGCACGu -3'
miRNA:   3'- gGCAcuUGCACUUUGCGUUC-----CGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.