miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17105 3' -50.2 NC_004333.2 + 652 1.13 0.001918
Target:  5'- cCCGUGAACGUGAAACGCAAGGCACGGu -3'
miRNA:   3'- -GGCACUUGCACUUUGCGUUCCGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 12412 0.8 0.287053
Target:  5'- aCCGUcgcGAACGUGAAugcgaacgucaacccGCGCGAGGCugGc -3'
miRNA:   3'- -GGCA---CUUGCACUU---------------UGCGUUCCGugCc -5'
17105 3' -50.2 NC_004333.2 + 32487 0.77 0.383168
Target:  5'- cUCGUcAGCGaGcuGCGCGAGGCGCGGg -3'
miRNA:   3'- -GGCAcUUGCaCuuUGCGUUCCGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 13852 0.77 0.42092
Target:  5'- -aGUGGACGUGAGcaacuacacgccGCGCGAGcggcGCGCGGc -3'
miRNA:   3'- ggCACUUGCACUU------------UGCGUUC----CGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 42011 0.76 0.440618
Target:  5'- uCgGUGcGCGUGAAGCGCGcGGCcaacgaGCGGg -3'
miRNA:   3'- -GgCACuUGCACUUUGCGUuCCG------UGCC- -5'
17105 3' -50.2 NC_004333.2 + 2789 0.75 0.513373
Target:  5'- aCCGUGaAGCG-GuuGCGCAGGGCAUc- -3'
miRNA:   3'- -GGCAC-UUGCaCuuUGCGUUCCGUGcc -5'
17105 3' -50.2 NC_004333.2 + 44254 0.73 0.590578
Target:  5'- gCCGggcaggcgGAACGUGAAACaGUAGGcGCGCGu -3'
miRNA:   3'- -GGCa-------CUUGCACUUUG-CGUUC-CGUGCc -5'
17105 3' -50.2 NC_004333.2 + 26263 0.73 0.601824
Target:  5'- uUCGcUGAACGUGAGGCaGUAuguGGCGCGc -3'
miRNA:   3'- -GGC-ACUUGCACUUUG-CGUu--CCGUGCc -5'
17105 3' -50.2 NC_004333.2 + 38970 0.73 0.613097
Target:  5'- gCCGUGccgaucAGCGcGAAgcgGCGCGGGuGCGCGGa -3'
miRNA:   3'- -GGCAC------UUGCaCUU---UGCGUUC-CGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 43262 0.72 0.669515
Target:  5'- gCCaGUGAGaCG-GggGCGCAAGGgGCGc -3'
miRNA:   3'- -GG-CACUU-GCaCuuUGCGUUCCgUGCc -5'
17105 3' -50.2 NC_004333.2 + 25077 0.71 0.70301
Target:  5'- uCCGUGGcgaucaGCGUGAcAgGC--GGCGCGGa -3'
miRNA:   3'- -GGCACU------UGCACUuUgCGuuCCGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 30526 0.71 0.745522
Target:  5'- gCCGUGAcgucgACgGUGAAacagacgugGCGCGAGGCagucgcuACGGc -3'
miRNA:   3'- -GGCACU-----UG-CACUU---------UGCGUUCCG-------UGCC- -5'
17105 3' -50.2 NC_004333.2 + 41328 0.71 0.746591
Target:  5'- gCGaUGGACGUGAcGCGCGAGuguGUACGu -3'
miRNA:   3'- gGC-ACUUGCACUuUGCGUUC---CGUGCc -5'
17105 3' -50.2 NC_004333.2 + 2840 0.7 0.757212
Target:  5'- aCGgu--CGUGAcgAACGCGAccGGCACGGc -3'
miRNA:   3'- gGCacuuGCACU--UUGCGUU--CCGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 22531 0.7 0.778037
Target:  5'- uCCaGUaGAACGUGAuguugccgAGCGaCGAGcGCGCGGu -3'
miRNA:   3'- -GG-CA-CUUGCACU--------UUGC-GUUC-CGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 26653 0.69 0.808051
Target:  5'- cUCGUGAGCGUGAucGCGCc-GGCugcCGa -3'
miRNA:   3'- -GGCACUUGCACUu-UGCGuuCCGu--GCc -5'
17105 3' -50.2 NC_004333.2 + 19494 0.69 0.808051
Target:  5'- gCGUGAACGU----CGCGGGuaGCGCGGc -3'
miRNA:   3'- gGCACUUGCAcuuuGCGUUC--CGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 33831 0.69 0.827108
Target:  5'- aUCGUGAACGUGAc-----GGGCACGa -3'
miRNA:   3'- -GGCACUUGCACUuugcguUCCGUGCc -5'
17105 3' -50.2 NC_004333.2 + 17709 0.69 0.845301
Target:  5'- uUCGcGAACGUGucggccACgGCAccGGGCGCGGc -3'
miRNA:   3'- -GGCaCUUGCACuu----UG-CGU--UCCGUGCC- -5'
17105 3' -50.2 NC_004333.2 + 344 0.68 0.860027
Target:  5'- gCCGUGAcCGUGcucggcGGCGUGAcgaccacaucgaacGGCACGGc -3'
miRNA:   3'- -GGCACUuGCACu-----UUGCGUU--------------CCGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.