Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17106 | 3' | -55 | NC_004333.2 | + | 775 | 1.13 | 0.00043 |
Target: 5'- gUCCACUGCAGCCCUUCGACCUUGAGCg -3' miRNA: 3'- -AGGUGACGUCGGGAAGCUGGAACUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 39831 | 0.76 | 0.187638 |
Target: 5'- gUCCACUGCAgGCCCUUgaugcggcaGACCaucGAGCa -3' miRNA: 3'- -AGGUGACGU-CGGGAAg--------CUGGaa-CUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 2944 | 0.73 | 0.309684 |
Target: 5'- gCCGCUGUAGCCCUgCaGCUgcgcGAGCg -3' miRNA: 3'- aGGUGACGUCGGGAaGcUGGaa--CUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 31906 | 0.72 | 0.333725 |
Target: 5'- cCCGCUGCAGCUCUacacgcugaucUCG-CCgcaGGGCa -3' miRNA: 3'- aGGUGACGUCGGGA-----------AGCuGGaa-CUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 40531 | 0.71 | 0.377658 |
Target: 5'- cCCGCUGCAGCCCcguacuugacuuucUUUGAUCUgucccgcuuaguagGAGUg -3' miRNA: 3'- aGGUGACGUCGGG--------------AAGCUGGAa-------------CUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 20458 | 0.71 | 0.394991 |
Target: 5'- gCCACUGCGGCCa--CGGCCUUa--- -3' miRNA: 3'- aGGUGACGUCGGgaaGCUGGAAcucg -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 18057 | 0.7 | 0.413783 |
Target: 5'- cCCGCUGCuGCgCagucCGACCUcUGGGCg -3' miRNA: 3'- aGGUGACGuCGgGaa--GCUGGA-ACUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 24500 | 0.7 | 0.433115 |
Target: 5'- -gCGCUGCuGGCCUcaUUCGACCagUGGGUc -3' miRNA: 3'- agGUGACG-UCGGG--AAGCUGGa-ACUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 12937 | 0.7 | 0.46307 |
Target: 5'- -gCACUGCAgGCCCa--GGCCcagGAGCa -3' miRNA: 3'- agGUGACGU-CGGGaagCUGGaa-CUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 33870 | 0.7 | 0.46307 |
Target: 5'- gCUGCUGCAGCCgagUCGGCC---AGCg -3' miRNA: 3'- aGGUGACGUCGGga-AGCUGGaacUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 45466 | 0.69 | 0.473294 |
Target: 5'- gCCAgguCUGCGGCCUUgcCGACCU--GGCg -3' miRNA: 3'- aGGU---GACGUCGGGAa-GCUGGAacUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 18517 | 0.68 | 0.536811 |
Target: 5'- -aCGCUGCAGCggCCUUCGcaGCCggcGGCa -3' miRNA: 3'- agGUGACGUCG--GGAAGC--UGGaacUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 18576 | 0.68 | 0.547702 |
Target: 5'- gCCGCUGCAGCguCCgUCGGCgUgccGGCa -3' miRNA: 3'- aGGUGACGUCG--GGaAGCUGgAac-UCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 38621 | 0.68 | 0.569682 |
Target: 5'- gCCGCUGCccgugguGCCCguucugaUCGGCCc-GGGCg -3' miRNA: 3'- aGGUGACGu------CGGGa------AGCUGGaaCUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 42222 | 0.68 | 0.569682 |
Target: 5'- -aCGCUGUuGCCC-UCGGgCgUGAGCg -3' miRNA: 3'- agGUGACGuCGGGaAGCUgGaACUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 41604 | 0.68 | 0.580755 |
Target: 5'- -gCACUGCGGCCCacgcgcucgcUCGugCUcuGGCg -3' miRNA: 3'- agGUGACGUCGGGa---------AGCugGAacUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 39017 | 0.67 | 0.603025 |
Target: 5'- -gCGCUGCAGCUgUUCG-CCga-GGCa -3' miRNA: 3'- agGUGACGUCGGgAAGCuGGaacUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 46360 | 0.67 | 0.636599 |
Target: 5'- gCCGCUGCGGaUUUggcgCGGCCUaggacagucggUGAGCa -3' miRNA: 3'- aGGUGACGUCgGGAa---GCUGGA-----------ACUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 17181 | 0.66 | 0.645557 |
Target: 5'- gCCGCUGCgAGCCC--CGAUCUguuuaucgucgcGGGCg -3' miRNA: 3'- aGGUGACG-UCGGGaaGCUGGAa-----------CUCG- -5' |
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17106 | 3' | -55 | NC_004333.2 | + | 26870 | 0.66 | 0.647796 |
Target: 5'- -aCACUGCgAGCCCgaugUC-ACCUUcugccggaucGAGCa -3' miRNA: 3'- agGUGACG-UCGGGa---AGcUGGAA----------CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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