Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17106 | 5' | -58 | NC_004333.2 | + | 36345 | 0.67 | 0.401057 |
Target: 5'- uGGCGCAGGACgucGCGugucGCUGCAUg- -3' miRNA: 3'- gCCGCGUCCUGgcuUGU----CGACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 30776 | 0.67 | 0.401057 |
Target: 5'- aCGGCGCGGcGACCGucauGACGacguucgccauGUUGCGCa- -3' miRNA: 3'- -GCCGCGUC-CUGGC----UUGU-----------CGACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 5960 | 0.67 | 0.400133 |
Target: 5'- aCGGUGCuGGACaacugcaUGGGCAGCgGCACc- -3' miRNA: 3'- -GCCGCGuCCUG-------GCUUGUCGaCGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 13972 | 0.68 | 0.391871 |
Target: 5'- gCGGCgGCcGGugCGcGCgAGCUGCGCg- -3' miRNA: 3'- -GCCG-CGuCCugGCuUG-UCGACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 38950 | 0.68 | 0.365147 |
Target: 5'- gCGGCGCGGGugCGcggacgGGCGGCguucguaugGCGCc- -3' miRNA: 3'- -GCCGCGUCCugGC------UUGUCGa--------CGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 26616 | 0.68 | 0.365147 |
Target: 5'- cCGGCGCGGGcuCCGuGCAGUUcgccGCACc- -3' miRNA: 3'- -GCCGCGUCCu-GGCuUGUCGA----CGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 7513 | 0.69 | 0.323477 |
Target: 5'- aCGGCGUcGGGCCGucucguGCAGCUcuggGCGCc- -3' miRNA: 3'- -GCCGCGuCCUGGCu-----UGUCGA----CGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 17562 | 0.69 | 0.30783 |
Target: 5'- uCGGUGCGGucgaGugCGAGCAGCgugaGCGCg- -3' miRNA: 3'- -GCCGCGUC----CugGCUUGUCGa---CGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 48094 | 0.7 | 0.292768 |
Target: 5'- aGGCGCAGGcggcaACCGGGCGcGC-GCACc- -3' miRNA: 3'- gCCGCGUCC-----UGGCUUGU-CGaCGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 9604 | 0.71 | 0.257646 |
Target: 5'- cCGGCGCGGcAUCGGcCGGUUGCGCa- -3' miRNA: 3'- -GCCGCGUCcUGGCUuGUCGACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 30407 | 0.71 | 0.257646 |
Target: 5'- cCGGCGCcGGACCGAAUucGC-GCGCc- -3' miRNA: 3'- -GCCGCGuCCUGGCUUGu-CGaCGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 31364 | 0.71 | 0.251049 |
Target: 5'- uCGGCGCAGGugCGGccggucucgccgGCAugguGCUuGCACUg -3' miRNA: 3'- -GCCGCGUCCugGCU------------UGU----CGA-CGUGAa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 5067 | 0.71 | 0.244593 |
Target: 5'- uCGGCGCGGcGCUGAACAGCgucaGCAg-- -3' miRNA: 3'- -GCCGCGUCcUGGCUUGUCGa---CGUgaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 6416 | 0.71 | 0.242682 |
Target: 5'- cCGGCGCAucguaaaaucgcgcGGugCGGucguccucACGGCUGCGCa- -3' miRNA: 3'- -GCCGCGU--------------CCugGCU--------UGUCGACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 20732 | 0.71 | 0.238274 |
Target: 5'- aCGGCGCGcgcgcugccGGacaucGCCGAcGCGGCUGCGCg- -3' miRNA: 3'- -GCCGCGU---------CC-----UGGCU-UGUCGACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 41743 | 0.71 | 0.238274 |
Target: 5'- uCGGCGCGGGcgacucgcgcGCCGGGCuaugGGuCUGCACg- -3' miRNA: 3'- -GCCGCGUCC----------UGGCUUG----UC-GACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 13646 | 0.72 | 0.192527 |
Target: 5'- -cGCGCGGuACuCGGGCAGCUGCGCg- -3' miRNA: 3'- gcCGCGUCcUG-GCUUGUCGACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 9703 | 0.73 | 0.177458 |
Target: 5'- gGGCGCAGGcgcGCCGccGGCAGCcggUGCGCa- -3' miRNA: 3'- gCCGCGUCC---UGGC--UUGUCG---ACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 9513 | 0.73 | 0.162996 |
Target: 5'- gGuGCGCAGGAcggcgaaCCGGACGGCgUGCGCa- -3' miRNA: 3'- gC-CGCGUCCU-------GGCUUGUCG-ACGUGaa -5' |
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17106 | 5' | -58 | NC_004333.2 | + | 20580 | 0.75 | 0.127207 |
Target: 5'- gCGGCGCGGcggcGGCCGGcaGCGGUUGCGCg- -3' miRNA: 3'- -GCCGCGUC----CUGGCU--UGUCGACGUGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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