miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17107 5' -55.9 NC_004333.2 + 11986 0.66 0.611123
Target:  5'- gGC-GCGCGCGcCGcUGCGCaUGCcgGg -3'
miRNA:   3'- aCGaCGCGCGCuGCaACGUG-ACGuaU- -5'
17107 5' -55.9 NC_004333.2 + 29863 0.66 0.611123
Target:  5'- aGCgaaGCGCGCGcgguagucgucgGCGaaGCGCUGCGc- -3'
miRNA:   3'- aCGa--CGCGCGC------------UGCaaCGUGACGUau -5'
17107 5' -55.9 NC_004333.2 + 19792 0.66 0.611123
Target:  5'- gUGCcGCGCGUugaguGCGaUGCGCUGCu-- -3'
miRNA:   3'- -ACGaCGCGCGc----UGCaACGUGACGuau -5'
17107 5' -55.9 NC_004333.2 + 2751 0.66 0.599846
Target:  5'- cGCcGCcgGCGCGACGcUGCaaGCUGCcgGc -3'
miRNA:   3'- aCGaCG--CGCGCUGCaACG--UGACGuaU- -5'
17107 5' -55.9 NC_004333.2 + 12070 0.66 0.599846
Target:  5'- aGCUGC-CGCaucCGUUGCACcGCGa- -3'
miRNA:   3'- aCGACGcGCGcu-GCAACGUGaCGUau -5'
17107 5' -55.9 NC_004333.2 + 44869 0.66 0.598719
Target:  5'- cGCcGCGCGCGACaaccUGCccgacucGCUGCGc- -3'
miRNA:   3'- aCGaCGCGCGCUGca--ACG-------UGACGUau -5'
17107 5' -55.9 NC_004333.2 + 48045 0.66 0.58523
Target:  5'- cGCUGgugguuugugcucaUGCGCGAUGUcGUGCUGCu-- -3'
miRNA:   3'- aCGAC--------------GCGCGCUGCAaCGUGACGuau -5'
17107 5' -55.9 NC_004333.2 + 36271 0.66 0.577388
Target:  5'- aUGCaGCGacaCGCGACGUccUGCGCcaUGCGa- -3'
miRNA:   3'- -ACGaCGC---GCGCUGCA--ACGUG--ACGUau -5'
17107 5' -55.9 NC_004333.2 + 11286 0.66 0.577388
Target:  5'- cGUUGcCGCGCGcUGUUGaACUGCGc- -3'
miRNA:   3'- aCGAC-GCGCGCuGCAACgUGACGUau -5'
17107 5' -55.9 NC_004333.2 + 4183 0.66 0.566225
Target:  5'- gUGCUGCa-GCGGCGUgUGCuuCUGCGc- -3'
miRNA:   3'- -ACGACGcgCGCUGCA-ACGu-GACGUau -5'
17107 5' -55.9 NC_004333.2 + 20581 0.66 0.55512
Target:  5'- aGCgGCGCgGCGGCGgccggcagcggUUGCGCgGCAg- -3'
miRNA:   3'- aCGaCGCG-CGCUGC-----------AACGUGaCGUau -5'
17107 5' -55.9 NC_004333.2 + 37260 0.67 0.534203
Target:  5'- gGCaccgGCGCGCGuCGUgagcggcgugucgccGCGCUGCGg- -3'
miRNA:   3'- aCGa---CGCGCGCuGCAa--------------CGUGACGUau -5'
17107 5' -55.9 NC_004333.2 + 36361 0.67 0.529835
Target:  5'- gGCgGCGCGUaucgcauggcgcagGACGUcgcgUGuCGCUGCAUGu -3'
miRNA:   3'- aCGaCGCGCG--------------CUGCA----AC-GUGACGUAU- -5'
17107 5' -55.9 NC_004333.2 + 2914 0.67 0.522222
Target:  5'- gUGCUGCGCaGCGGuCGUgaccgucaacgUGCcGCUGUAg- -3'
miRNA:   3'- -ACGACGCG-CGCU-GCA-----------ACG-UGACGUau -5'
17107 5' -55.9 NC_004333.2 + 42095 0.67 0.522222
Target:  5'- gUGCUGCGCGacgaGGCGUgucgcgaggUGCGCcaguugccggUGCAc- -3'
miRNA:   3'- -ACGACGCGCg---CUGCA---------ACGUG----------ACGUau -5'
17107 5' -55.9 NC_004333.2 + 3306 0.67 0.500713
Target:  5'- --gUGCGCGCGGCGgcGCGCgGUu-- -3'
miRNA:   3'- acgACGCGCGCUGCaaCGUGaCGuau -5'
17107 5' -55.9 NC_004333.2 + 28558 0.67 0.490105
Target:  5'- uUGUacuUGCGCGUGccGCGUUGCgACUGUg-- -3'
miRNA:   3'- -ACG---ACGCGCGC--UGCAACG-UGACGuau -5'
17107 5' -55.9 NC_004333.2 + 32805 0.68 0.479603
Target:  5'- -cCUGCGCGUGACGUucUGCucgccggcuaucGCUGCc-- -3'
miRNA:   3'- acGACGCGCGCUGCA--ACG------------UGACGuau -5'
17107 5' -55.9 NC_004333.2 + 13823 0.68 0.469213
Target:  5'- aGCgGCGCGCGGCGUccuacGCGCUcgacuucaacgGCAc- -3'
miRNA:   3'- aCGaCGCGCGCUGCAa----CGUGA-----------CGUau -5'
17107 5' -55.9 NC_004333.2 + 37438 0.68 0.458939
Target:  5'- gGC--CGCGCGACGcggUGCACgucGCGUAg -3'
miRNA:   3'- aCGacGCGCGCUGCa--ACGUGa--CGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.