miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17108 3' -54 NC_004333.2 + 31931 0.66 0.747206
Target:  5'- uGUGAcUCGaUCgacgacgGGCGacGCACCUUGUUGAa -3'
miRNA:   3'- gCACU-AGC-AG-------UCGC--CGUGGAGCAACU- -5'
17108 3' -54 NC_004333.2 + 13198 0.66 0.737679
Target:  5'- --cGAUCGUguGCaGGCGCgUCGcgUGGa -3'
miRNA:   3'- gcaCUAGCAguCG-CCGUGgAGCa-ACU- -5'
17108 3' -54 NC_004333.2 + 29117 0.66 0.737679
Target:  5'- gCGcGAUCGUgGGCGGCGCggugCUCGcgcUGGu -3'
miRNA:   3'- -GCaCUAGCAgUCGCCGUG----GAGCa--ACU- -5'
17108 3' -54 NC_004333.2 + 27233 0.67 0.694395
Target:  5'- uCGUGAUCG-CAGCGucugccugcgccGaCGCCUCGUa-- -3'
miRNA:   3'- -GCACUAGCaGUCGC------------C-GUGGAGCAacu -5'
17108 3' -54 NC_004333.2 + 3305 0.67 0.68339
Target:  5'- uGUGcgCG-CGGCGGCGCgCg-GUUGAa -3'
miRNA:   3'- gCACuaGCaGUCGCCGUG-GagCAACU- -5'
17108 3' -54 NC_004333.2 + 13622 0.69 0.605569
Target:  5'- ----cUCGUCGGCGaGCACUUCGUg-- -3'
miRNA:   3'- gcacuAGCAGUCGC-CGUGGAGCAacu -5'
17108 3' -54 NC_004333.2 + 17628 0.69 0.594465
Target:  5'- --aGGUCGUCGuGCaGCGCUUCGggGAu -3'
miRNA:   3'- gcaCUAGCAGU-CGcCGUGGAGCaaCU- -5'
17108 3' -54 NC_004333.2 + 47569 0.7 0.53961
Target:  5'- -cUGGUCGcgcCGGcCGGCGCCUCGUUc- -3'
miRNA:   3'- gcACUAGCa--GUC-GCCGUGGAGCAAcu -5'
17108 3' -54 NC_004333.2 + 3630 0.73 0.345046
Target:  5'- uGUGGUCGgccgacgCGcugcGCGGCACCgCGUUGAu -3'
miRNA:   3'- gCACUAGCa------GU----CGCCGUGGaGCAACU- -5'
17108 3' -54 NC_004333.2 + 8511 0.75 0.285487
Target:  5'- aCGUGGUggccgggcagaucaaCGUCGGCGGCACCguaUCGgcGAc -3'
miRNA:   3'- -GCACUA---------------GCAGUCGCCGUGG---AGCaaCU- -5'
17108 3' -54 NC_004333.2 + 1534 1.09 0.00115
Target:  5'- gCGUGAUCGUCAGCGGCACCUCGUUGAa -3'
miRNA:   3'- -GCACUAGCAGUCGCCGUGGAGCAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.