miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17108 5' -57.3 NC_004333.2 + 5189 0.67 0.528334
Target:  5'- cGGaCGACAAUGUGCUGcgCGAgcUGUUCAa -3'
miRNA:   3'- -CCgGCUGUUGCACGGCa-GCU--ACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 48064 0.67 0.517882
Target:  5'- uGCgCGAUGuCGUGCUGcUCGGUGCCg- -3'
miRNA:   3'- cCG-GCUGUuGCACGGC-AGCUACGGgu -5'
17108 5' -57.3 NC_004333.2 + 938 0.67 0.517882
Target:  5'- cGCCaACGGCGUcGUC-UCGGUGCCUAu -3'
miRNA:   3'- cCGGcUGUUGCA-CGGcAGCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 30259 0.67 0.517882
Target:  5'- cGGCaaACGGCGUGCgCGaguccgacUUGGUGCCCu -3'
miRNA:   3'- -CCGgcUGUUGCACG-GC--------AGCUACGGGu -5'
17108 5' -57.3 NC_004333.2 + 1525 0.67 0.517882
Target:  5'- cGGCCuGCAGCGUGaUCGUCaGcgGCaCCu -3'
miRNA:   3'- -CCGGcUGUUGCAC-GGCAG-CuaCG-GGu -5'
17108 5' -57.3 NC_004333.2 + 10056 0.67 0.507514
Target:  5'- --aCGACuucAGCGUGUCGg-GAUGCCCGa -3'
miRNA:   3'- ccgGCUG---UUGCACGGCagCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 5336 0.67 0.507514
Target:  5'- cGCUGGau-CGUcacgccGCCGUgGAUGCCCGg -3'
miRNA:   3'- cCGGCUguuGCA------CGGCAgCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 12359 0.67 0.497234
Target:  5'- cGCCG-CAauGCGcGCCGcCGGUGCCg- -3'
miRNA:   3'- cCGGCuGU--UGCaCGGCaGCUACGGgu -5'
17108 5' -57.3 NC_004333.2 + 22972 0.67 0.497234
Target:  5'- cGCCGGCAGCGUcGCgGUacCGGUcGCCgAg -3'
miRNA:   3'- cCGGCUGUUGCA-CGgCA--GCUA-CGGgU- -5'
17108 5' -57.3 NC_004333.2 + 19941 0.68 0.48705
Target:  5'- cGCCGGgCGGCGaGCCGccgCGAgugcuuUGCCCGa -3'
miRNA:   3'- cCGGCU-GUUGCaCGGCa--GCU------ACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 41600 0.68 0.476965
Target:  5'- cGCUGACGAUGUGCCGgUGuUGCUUc -3'
miRNA:   3'- cCGGCUGUUGCACGGCaGCuACGGGu -5'
17108 5' -57.3 NC_004333.2 + 42638 0.68 0.476965
Target:  5'- uGGCaaCGAC-GCGgauaagGCCGU-GAUGCCCGu -3'
miRNA:   3'- -CCG--GCUGuUGCa-----CGGCAgCUACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 23491 0.68 0.470964
Target:  5'- cGGCCGGCGgcggguACGUGCCGggcuaccaguacggCGugaccGCCCu -3'
miRNA:   3'- -CCGGCUGU------UGCACGGCa-------------GCua---CGGGu -5'
17108 5' -57.3 NC_004333.2 + 12503 0.68 0.466984
Target:  5'- uGCCGGCAuACGgGCCGUCcg-GCUCGg -3'
miRNA:   3'- cCGGCUGU-UGCaCGGCAGcuaCGGGU- -5'
17108 5' -57.3 NC_004333.2 + 25199 0.68 0.466984
Target:  5'- aGGCCGcgAACGUGCgCGcCGccgugcucgccGUGCCCGg -3'
miRNA:   3'- -CCGGCugUUGCACG-GCaGC-----------UACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 30365 0.68 0.466984
Target:  5'- aGGCgCGACGGCGgccagcucGCCGUCGAaaCUCGa -3'
miRNA:   3'- -CCG-GCUGUUGCa-------CGGCAGCUacGGGU- -5'
17108 5' -57.3 NC_004333.2 + 30052 0.68 0.466984
Target:  5'- uGCUGAuCGAcCGUGCCaaagcgcggGUCGAUGCCg- -3'
miRNA:   3'- cCGGCU-GUU-GCACGG---------CAGCUACGGgu -5'
17108 5' -57.3 NC_004333.2 + 24899 0.68 0.464011
Target:  5'- cGGUCGAggucuacuuCAACGUGCagGUCGcgcagcugccgaacGUGCCCGc -3'
miRNA:   3'- -CCGGCU---------GUUGCACGg-CAGC--------------UACGGGU- -5'
17108 5' -57.3 NC_004333.2 + 18315 0.68 0.457113
Target:  5'- uGCgGauuaGCAGCGUGCCGUCGgcGUCg- -3'
miRNA:   3'- cCGgC----UGUUGCACGGCAGCuaCGGgu -5'
17108 5' -57.3 NC_004333.2 + 37795 0.68 0.457113
Target:  5'- aGGCgCGGCAGCuUGCCGacaUCGAgcagGCCa- -3'
miRNA:   3'- -CCG-GCUGUUGcACGGC---AGCUa---CGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.