miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17109 5' -63.3 NC_004333.2 + 4723 0.66 0.300771
Target:  5'- -cGCGCCGGCcuGCCCGuCGCCaugaucGCGAu -3'
miRNA:   3'- gaCGUGGUCGacCGGGC-GUGGc-----CGCU- -5'
17109 5' -63.3 NC_004333.2 + 20526 0.66 0.298609
Target:  5'- -cGCGCCGcucGCUGGCggccuguaacauggCCGCGCCGcUGAu -3'
miRNA:   3'- gaCGUGGU---CGACCG--------------GGCGUGGCcGCU- -5'
17109 5' -63.3 NC_004333.2 + 20659 0.66 0.29361
Target:  5'- gCUGCGCCAG-UGGCaggaggCGCACgGGaUGAc -3'
miRNA:   3'- -GACGUGGUCgACCGg-----GCGUGgCC-GCU- -5'
17109 5' -63.3 NC_004333.2 + 13723 0.66 0.29361
Target:  5'- gCUGCucGCgCAGCU-GCCCgaGUACCGcGCGAu -3'
miRNA:   3'- -GACG--UG-GUCGAcCGGG--CGUGGC-CGCU- -5'
17109 5' -63.3 NC_004333.2 + 10943 0.66 0.286582
Target:  5'- -cGCGCCGGCguucuuCCCGCG-CGGCGu -3'
miRNA:   3'- gaCGUGGUCGacc---GGGCGUgGCCGCu -5'
17109 5' -63.3 NC_004333.2 + 9526 0.66 0.286582
Target:  5'- -gGCACCcGCgccUGGUgCGCAggaCGGCGAa -3'
miRNA:   3'- gaCGUGGuCG---ACCGgGCGUg--GCCGCU- -5'
17109 5' -63.3 NC_004333.2 + 30295 0.66 0.286582
Target:  5'- ---gGCgAGCUGGCCgccguCGCGCCuGCGAc -3'
miRNA:   3'- gacgUGgUCGACCGG-----GCGUGGcCGCU- -5'
17109 5' -63.3 NC_004333.2 + 8728 0.66 0.286582
Target:  5'- -gGCACCgucacgagcaAGCcgGGCgCCGCGCCGaGCu- -3'
miRNA:   3'- gaCGUGG----------UCGa-CCG-GGCGUGGC-CGcu -5'
17109 5' -63.3 NC_004333.2 + 30044 0.66 0.285887
Target:  5'- -gGCGCCGG-UGGCagcgcggCCGCGCuCGGCa- -3'
miRNA:   3'- gaCGUGGUCgACCG-------GGCGUG-GCCGcu -5'
17109 5' -63.3 NC_004333.2 + 28735 0.66 0.279688
Target:  5'- -cGCACCGGaauuCUGcGaCCGCGauCCGGCGAc -3'
miRNA:   3'- gaCGUGGUC----GAC-CgGGCGU--GGCCGCU- -5'
17109 5' -63.3 NC_004333.2 + 39289 0.66 0.279688
Target:  5'- uUGCACgCAGCUcGGCCgacgggaGCGCgGGCc- -3'
miRNA:   3'- gACGUG-GUCGA-CCGGg------CGUGgCCGcu -5'
17109 5' -63.3 NC_004333.2 + 9461 0.66 0.272926
Target:  5'- -cGCACCAgGCgcgGGUgCCGCACCGccgcCGAg -3'
miRNA:   3'- gaCGUGGU-CGa--CCG-GGCGUGGCc---GCU- -5'
17109 5' -63.3 NC_004333.2 + 43050 0.66 0.272926
Target:  5'- -aGCGCC-GCccGCUCGUccGCCGGCGAg -3'
miRNA:   3'- gaCGUGGuCGacCGGGCG--UGGCCGCU- -5'
17109 5' -63.3 NC_004333.2 + 12584 0.66 0.272926
Target:  5'- cCUGaaCACCgAGCcggacGGCCCGUauGCCGGCa- -3'
miRNA:   3'- -GAC--GUGG-UCGa----CCGGGCG--UGGCCGcu -5'
17109 5' -63.3 NC_004333.2 + 2032 0.66 0.272926
Target:  5'- aCUGCAgCaaaucgacaaGGC-GGCCCGCgucGCCGGUGc -3'
miRNA:   3'- -GACGUgG----------UCGaCCGGGCG---UGGCCGCu -5'
17109 5' -63.3 NC_004333.2 + 8499 0.66 0.272926
Target:  5'- -gGCAgaucaacgUCGGC-GGCaCCGUAUCGGCGAc -3'
miRNA:   3'- gaCGU--------GGUCGaCCG-GGCGUGGCCGCU- -5'
17109 5' -63.3 NC_004333.2 + 27251 0.66 0.270258
Target:  5'- cCUGCGCCgacgccucguauucGGaCUGGCUgaacgguCGCcacgaGCCGGCGAa -3'
miRNA:   3'- -GACGUGG--------------UC-GACCGG-------GCG-----UGGCCGCU- -5'
17109 5' -63.3 NC_004333.2 + 13507 0.66 0.268932
Target:  5'- uCUGCuuCAGCUGGUcgccguccgacgugcUCGCggcguugccGCCGGCGGc -3'
miRNA:   3'- -GACGugGUCGACCG---------------GGCG---------UGGCCGCU- -5'
17109 5' -63.3 NC_004333.2 + 6998 0.66 0.266296
Target:  5'- gUGCugCgAGUUGGCCgGUGCagauucaucaaaCGGCGAa -3'
miRNA:   3'- gACGugG-UCGACCGGgCGUG------------GCCGCU- -5'
17109 5' -63.3 NC_004333.2 + 13879 0.66 0.259797
Target:  5'- -cGCGCCGcGCgaagucGGCCgGCACgGGCu- -3'
miRNA:   3'- gaCGUGGU-CGa-----CCGGgCGUGgCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.