miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17110 3' -59 NC_004333.2 + 17089 0.66 0.524687
Target:  5'- -uCGGCGAACcgggccacaaggucuACCUGUcaGCCGAACa -3'
miRNA:   3'- gcGCCGCUUG---------------UGGACGcgCGGCUUGc -5'
17110 3' -59 NC_004333.2 + 21779 0.66 0.52056
Target:  5'- uGCuGGCGcacguGCGCauagaGCGCGUCGAGCu -3'
miRNA:   3'- gCG-CCGCu----UGUGga---CGCGCGGCUUGc -5'
17110 3' -59 NC_004333.2 + 28755 0.66 0.52056
Target:  5'- uGC-GCGAGCGCC-GCGuCGaCCGcGCGg -3'
miRNA:   3'- gCGcCGCUUGUGGaCGC-GC-GGCuUGC- -5'
17110 3' -59 NC_004333.2 + 47593 0.66 0.52056
Target:  5'- cCGCaGGCGuucauuCAgCUGCGCGUCGccgagaugGGCGg -3'
miRNA:   3'- -GCG-CCGCuu----GUgGACGCGCGGC--------UUGC- -5'
17110 3' -59 NC_004333.2 + 44923 0.66 0.51953
Target:  5'- gCGCGGCGAucuucuucaGCgucucgcgGCCaGCGUcguccauguccucGCCGAGCGu -3'
miRNA:   3'- -GCGCCGCU---------UG--------UGGaCGCG-------------CGGCUUGC- -5'
17110 3' -59 NC_004333.2 + 25479 0.66 0.514393
Target:  5'- uCGCGGCGAcaGCCggguugcGUGUcaugaaguagaugcgGCCGAGCGc -3'
miRNA:   3'- -GCGCCGCUugUGGa------CGCG---------------CGGCUUGC- -5'
17110 3' -59 NC_004333.2 + 45264 0.66 0.510298
Target:  5'- uCGUGGCGcgGACAgCUGC-CGCUGcGCa -3'
miRNA:   3'- -GCGCCGC--UUGUgGACGcGCGGCuUGc -5'
17110 3' -59 NC_004333.2 + 39061 0.66 0.510298
Target:  5'- gGaCGGCGAguACGCgCgacucGUGCGCCGuGCGu -3'
miRNA:   3'- gC-GCCGCU--UGUG-Ga----CGCGCGGCuUGC- -5'
17110 3' -59 NC_004333.2 + 8226 0.66 0.510298
Target:  5'- aCGCGGcCGAccugucgccACACCUGU-CGUCG-ACGg -3'
miRNA:   3'- -GCGCC-GCU---------UGUGGACGcGCGGCuUGC- -5'
17110 3' -59 NC_004333.2 + 15988 0.66 0.510298
Target:  5'- gGCGGCGAugGCACCguggGCG-GUCGcauCGu -3'
miRNA:   3'- gCGCCGCU--UGUGGa---CGCgCGGCuu-GC- -5'
17110 3' -59 NC_004333.2 + 12439 0.66 0.510298
Target:  5'- gCGCgGGCGGGCGCUacgGCGCccCCGAccgucGCGa -3'
miRNA:   3'- -GCG-CCGCUUGUGGa--CGCGc-GGCU-----UGC- -5'
17110 3' -59 NC_004333.2 + 4190 0.66 0.500121
Target:  5'- aGCGGCGuguGCuuCUGCGC-CUGGAUu -3'
miRNA:   3'- gCGCCGCu--UGugGACGCGcGGCUUGc -5'
17110 3' -59 NC_004333.2 + 37976 0.66 0.500121
Target:  5'- gGUGGCGAACAUucuccaagcaCUGCccGCGUCGcuCGg -3'
miRNA:   3'- gCGCCGCUUGUG----------GACG--CGCGGCuuGC- -5'
17110 3' -59 NC_004333.2 + 29039 0.66 0.49104
Target:  5'- aGC-GCGAGCACCgcgccgcccacgauCGCGCCGAguugGCGc -3'
miRNA:   3'- gCGcCGCUUGUGGac------------GCGCGGCU----UGC- -5'
17110 3' -59 NC_004333.2 + 30290 0.66 0.490035
Target:  5'- uCGaCGGCGAGCugGCCgccGuCGCGCCu-GCGa -3'
miRNA:   3'- -GC-GCCGCUUG--UGGa--C-GCGCGGcuUGC- -5'
17110 3' -59 NC_004333.2 + 10647 0.66 0.490035
Target:  5'- gGCGGCGAAgaaaggugacguCACg-GuCGCGCCGGcCGg -3'
miRNA:   3'- gCGCCGCUU------------GUGgaC-GCGCGGCUuGC- -5'
17110 3' -59 NC_004333.2 + 30398 0.66 0.490035
Target:  5'- uCGaaGCGAccgGCGCCggaccgaauucGCGCGCCGuAGCGa -3'
miRNA:   3'- -GCgcCGCU---UGUGGa----------CGCGCGGC-UUGC- -5'
17110 3' -59 NC_004333.2 + 35906 0.66 0.480045
Target:  5'- aCGCGGCGAAgUAUCUGgGguUGCCGcAGCc -3'
miRNA:   3'- -GCGCCGCUU-GUGGACgC--GCGGC-UUGc -5'
17110 3' -59 NC_004333.2 + 45126 0.66 0.480045
Target:  5'- gCGCGGCGAucgcgccUACCUGuCGuCGcCCGAAg- -3'
miRNA:   3'- -GCGCCGCUu------GUGGAC-GC-GC-GGCUUgc -5'
17110 3' -59 NC_004333.2 + 41812 0.66 0.480045
Target:  5'- gGCGcGCGAGuCGCC--CGCGCCGAu-- -3'
miRNA:   3'- gCGC-CGCUU-GUGGacGCGCGGCUugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.