miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17110 3' -59 NC_004333.2 + 995 0.67 0.441133
Target:  5'- gCGCGGCGcACGCUacgaggGCGCaauGCCGAccaACa -3'
miRNA:   3'- -GCGCCGCuUGUGGa-----CGCG---CGGCU---UGc -5'
17110 3' -59 NC_004333.2 + 1643 0.71 0.270155
Target:  5'- gGCGGCGuAGC-CCUGaauGCGCUGcGCGg -3'
miRNA:   3'- gCGCCGC-UUGuGGACg--CGCGGCuUGC- -5'
17110 3' -59 NC_004333.2 + 2331 0.69 0.344167
Target:  5'- gGCGgaauGCGAGCACCgUGCG-GCCGuuGCGc -3'
miRNA:   3'- gCGC----CGCUUGUGG-ACGCgCGGCu-UGC- -5'
17110 3' -59 NC_004333.2 + 2340 0.67 0.441133
Target:  5'- gCGaCGGCaAACGCgCUGCGC-UCGAACa -3'
miRNA:   3'- -GC-GCCGcUUGUG-GACGCGcGGCUUGc -5'
17110 3' -59 NC_004333.2 + 2379 0.68 0.395119
Target:  5'- aCGCGGCGuAGC-CCaUGacgGCGCCG-GCGg -3'
miRNA:   3'- -GCGCCGC-UUGuGG-ACg--CGCGGCuUGC- -5'
17110 3' -59 NC_004333.2 + 2448 1.09 0.000426
Target:  5'- gCGCGGCGAACACCUGCGCGCCGAACGa -3'
miRNA:   3'- -GCGCCGCUUGUGGACGCGCGGCUUGC- -5'
17110 3' -59 NC_004333.2 + 3070 0.7 0.305447
Target:  5'- uCGCGGCGGACGC--GC-CGgCGAGCGu -3'
miRNA:   3'- -GCGCCGCUUGUGgaCGcGCgGCUUGC- -5'
17110 3' -59 NC_004333.2 + 3085 0.77 0.093181
Target:  5'- gCGuCGGCGAucuuCGCCUcguucgacaGCGCGCCGAACc -3'
miRNA:   3'- -GC-GCCGCUu---GUGGA---------CGCGCGGCUUGc -5'
17110 3' -59 NC_004333.2 + 3200 0.69 0.328267
Target:  5'- gGcCGGUGAGCcgGCCcgGCGCGCCGccCGc -3'
miRNA:   3'- gC-GCCGCUUG--UGGa-CGCGCGGCuuGC- -5'
17110 3' -59 NC_004333.2 + 3283 0.72 0.209508
Target:  5'- uCGgGGCGGGCg---GCGCGCCGGGCc -3'
miRNA:   3'- -GCgCCGCUUGuggaCGCGCGGCUUGc -5'
17110 3' -59 NC_004333.2 + 3551 0.68 0.386295
Target:  5'- aCGCGGUGccGCGCa-GCGCGUCGGcCGa -3'
miRNA:   3'- -GCGCCGCu-UGUGgaCGCGCGGCUuGC- -5'
17110 3' -59 NC_004333.2 + 3596 0.73 0.180941
Target:  5'- uCGCGGCGaucGuauucgcccagucggGCGCCUGCGgGCCGuAGCa -3'
miRNA:   3'- -GCGCCGC---U---------------UGUGGACGCgCGGC-UUGc -5'
17110 3' -59 NC_004333.2 + 3707 0.69 0.352323
Target:  5'- uGCGGaucgucugguUGAGCGCCUcGCGCacccCCGGGCGg -3'
miRNA:   3'- gCGCC----------GCUUGUGGA-CGCGc---GGCUUGC- -5'
17110 3' -59 NC_004333.2 + 3991 0.68 0.395119
Target:  5'- uGCGGCGuuuAGCugCUGCGUGaccuCGAagGCGc -3'
miRNA:   3'- gCGCCGC---UUGugGACGCGCg---GCU--UGC- -5'
17110 3' -59 NC_004333.2 + 4190 0.66 0.500121
Target:  5'- aGCGGCGuguGCuuCUGCGC-CUGGAUu -3'
miRNA:   3'- gCGCCGCu--UGugGACGCGcGGCUUGc -5'
17110 3' -59 NC_004333.2 + 4935 0.71 0.256986
Target:  5'- aGCGGCGGcagcgGCAUCggcacgGCGCGCgCGuACGg -3'
miRNA:   3'- gCGCCGCU-----UGUGGa-----CGCGCG-GCuUGC- -5'
17110 3' -59 NC_004333.2 + 5402 0.67 0.457457
Target:  5'- gGCGGCGuGACGauCCaGCGCGaaggcgcgaaagacCCGAACGc -3'
miRNA:   3'- gCGCCGC-UUGU--GGaCGCGC--------------GGCUUGC- -5'
17110 3' -59 NC_004333.2 + 6671 0.7 0.312916
Target:  5'- uGCGGCGcuGgGCg-GCGCGCCGuGGCGg -3'
miRNA:   3'- gCGCCGCu-UgUGgaCGCGCGGC-UUGC- -5'
17110 3' -59 NC_004333.2 + 6742 0.86 0.021164
Target:  5'- aGCGGCGGaugcGCGCCUgcucgaGCGCGCCGAGCGc -3'
miRNA:   3'- gCGCCGCU----UGUGGA------CGCGCGGCUUGC- -5'
17110 3' -59 NC_004333.2 + 6859 0.67 0.460371
Target:  5'- gGCGGCuGcGCACUgcauUGCGCaGCCaucGAGCGg -3'
miRNA:   3'- gCGCCG-CuUGUGG----ACGCG-CGG---CUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.