miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17111 3' -52.5 NC_004333.2 + 30452 0.66 0.830805
Target:  5'- --cGCuucGACGuUCGGCA-UCGCGGUc -3'
miRNA:   3'- uuaCGcu-CUGCuAGCCGUuAGUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 34635 0.66 0.830805
Target:  5'- --gGCaGGAUGcgCGGCGAUUgugguCGGCa -3'
miRNA:   3'- uuaCGcUCUGCuaGCCGUUAGu----GCCG- -5'
17111 3' -52.5 NC_004333.2 + 9277 0.66 0.830805
Target:  5'- cGUGCG-GAU--UCGGCu-UCACGGUc -3'
miRNA:   3'- uUACGCuCUGcuAGCCGuuAGUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 6837 0.66 0.830805
Target:  5'- --gGCGGGGCacucGUCGGCuaccgGCGGCu -3'
miRNA:   3'- uuaCGCUCUGc---UAGCCGuuag-UGCCG- -5'
17111 3' -52.5 NC_004333.2 + 872 0.66 0.830805
Target:  5'- ---cCGAGACGAcgccgUUGGCGAUCggaAUGGUg -3'
miRNA:   3'- uuacGCUCUGCU-----AGCCGUUAG---UGCCG- -5'
17111 3' -52.5 NC_004333.2 + 13609 0.66 0.822346
Target:  5'- aAGUGCG-GAUGcacucGUCGGCGAgcacuucgugcaucgCGCGGUa -3'
miRNA:   3'- -UUACGCuCUGC-----UAGCCGUUa--------------GUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 25553 0.66 0.821395
Target:  5'- --aGCGGGuCGAcaUUGGCGAUCAgCuGCg -3'
miRNA:   3'- uuaCGCUCuGCU--AGCCGUUAGU-GcCG- -5'
17111 3' -52.5 NC_004333.2 + 25942 0.66 0.821395
Target:  5'- --cGCGGcGCGAUgcCGGCGgccaGUaCGCGGCg -3'
miRNA:   3'- uuaCGCUcUGCUA--GCCGU----UA-GUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 41450 0.66 0.821395
Target:  5'- --cGCG-GGCGAgUCGGCcgucguGAUCcAUGGCg -3'
miRNA:   3'- uuaCGCuCUGCU-AGCCG------UUAG-UGCCG- -5'
17111 3' -52.5 NC_004333.2 + 41690 0.66 0.821395
Target:  5'- cGUGCucGACGcgggCGGCAAcuucgggcggCACGGCg -3'
miRNA:   3'- uUACGcuCUGCua--GCCGUUa---------GUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 38851 0.66 0.811773
Target:  5'- cAUGCcGGACauuUCGGCAAgcuCGGCg -3'
miRNA:   3'- uUACGcUCUGcu-AGCCGUUaguGCCG- -5'
17111 3' -52.5 NC_004333.2 + 42370 0.66 0.811773
Target:  5'- --cGCGAuacgccuCGGUCGGCAccUUGCGGCc -3'
miRNA:   3'- uuaCGCUcu-----GCUAGCCGUu-AGUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 8665 0.66 0.811773
Target:  5'- -uUGCucguGACGGugccgUCGGCGuucagCACGGCg -3'
miRNA:   3'- uuACGcu--CUGCU-----AGCCGUua---GUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 15088 0.66 0.811773
Target:  5'- --gGCGAGuuucGCGGcgUCGGCG-UCGgCGGCc -3'
miRNA:   3'- uuaCGCUC----UGCU--AGCCGUuAGU-GCCG- -5'
17111 3' -52.5 NC_004333.2 + 18475 0.66 0.811773
Target:  5'- --cGCGAGGCGuugcgcuUCGGaCGG-CACGaGCa -3'
miRNA:   3'- uuaCGCUCUGCu------AGCC-GUUaGUGC-CG- -5'
17111 3' -52.5 NC_004333.2 + 37952 0.66 0.801948
Target:  5'- --cGUGAaaGAC-AUCGGCcgcGUCACGGUg -3'
miRNA:   3'- uuaCGCU--CUGcUAGCCGu--UAGUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 12445 0.66 0.801948
Target:  5'- --gGCGGGGCGcg-GGCGGgcgcUACGGCg -3'
miRNA:   3'- uuaCGCUCUGCuagCCGUUa---GUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 25395 0.66 0.800955
Target:  5'- --cGCGAccguuacGuACGucgCGGCAGUCGcCGGCg -3'
miRNA:   3'- uuaCGCU-------C-UGCua-GCCGUUAGU-GCCG- -5'
17111 3' -52.5 NC_004333.2 + 29892 0.66 0.791934
Target:  5'- --aGCGcugcGCGAUCGGgcCGcgCGCGGCa -3'
miRNA:   3'- uuaCGCuc--UGCUAGCC--GUuaGUGCCG- -5'
17111 3' -52.5 NC_004333.2 + 39703 0.66 0.791934
Target:  5'- -cUGCGccacuGACGAcaagcgaccUCGGCAAgcuCGGCa -3'
miRNA:   3'- uuACGCu----CUGCU---------AGCCGUUaguGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.