miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17111 5' -53.7 NC_004333.2 + 18834 0.66 0.797509
Target:  5'- uGG-CGgGAAGGggaGCCgCAAcgUGCGCg -3'
miRNA:   3'- gCCaGCaCUUCCag-CGG-GUUa-ACGCG- -5'
17111 5' -53.7 NC_004333.2 + 25749 0.66 0.756994
Target:  5'- uCGG-CGUGAAGGUCG----GUUGCGg -3'
miRNA:   3'- -GCCaGCACUUCCAGCggguUAACGCg -5'
17111 5' -53.7 NC_004333.2 + 28295 0.66 0.756994
Target:  5'- aCGGUcaCGUGAcg--CGCCCGGacGCGCa -3'
miRNA:   3'- -GCCA--GCACUuccaGCGGGUUaaCGCG- -5'
17111 5' -53.7 NC_004333.2 + 7720 0.66 0.756994
Target:  5'- gCGGUCGUGAAcgaaGUCGUcgcgcuguuCCAggUGCuGCa -3'
miRNA:   3'- -GCCAGCACUUc---CAGCG---------GGUuaACG-CG- -5'
17111 5' -53.7 NC_004333.2 + 18178 0.67 0.725191
Target:  5'- cCGG-CGUGccGGgugaugCGCUCGucgUGCGCg -3'
miRNA:   3'- -GCCaGCACuuCCa-----GCGGGUua-ACGCG- -5'
17111 5' -53.7 NC_004333.2 + 45643 0.67 0.692531
Target:  5'- aCGuUCGUGAAGGacgCGCgCGcgcUGCGCa -3'
miRNA:   3'- -GCcAGCACUUCCa--GCGgGUua-ACGCG- -5'
17111 5' -53.7 NC_004333.2 + 7558 0.68 0.670439
Target:  5'- aGGUCGgacaUGgcGGUCGgcggcagaCCCA--UGCGCa -3'
miRNA:   3'- gCCAGC----ACuuCCAGC--------GGGUuaACGCG- -5'
17111 5' -53.7 NC_004333.2 + 2684 0.69 0.592512
Target:  5'- gCGGUCGgucu-GUCGCgCAAUUGgGCg -3'
miRNA:   3'- -GCCAGCacuucCAGCGgGUUAACgCG- -5'
17111 5' -53.7 NC_004333.2 + 2924 0.7 0.523674
Target:  5'- gCGGUCGUGAccGUCaacgugccgcuguaGCCCugcagcUGCGCg -3'
miRNA:   3'- -GCCAGCACUucCAG--------------CGGGuua---ACGCG- -5'
17111 5' -53.7 NC_004333.2 + 24223 0.71 0.495083
Target:  5'- cCGGaaacugcugcUCGUGAAGG-CGgCCGcgaacAUUGCGCg -3'
miRNA:   3'- -GCC----------AGCACUUCCaGCgGGU-----UAACGCG- -5'
17111 5' -53.7 NC_004333.2 + 36367 0.72 0.415026
Target:  5'- uCGGUCGUGAuaucccAGGUCGCgggaUCGAggGCGa -3'
miRNA:   3'- -GCCAGCACU------UCCAGCG----GGUUaaCGCg -5'
17111 5' -53.7 NC_004333.2 + 36211 0.75 0.288416
Target:  5'- aGG-CGuUGAAGGUUGCgCCGGUcGCGCa -3'
miRNA:   3'- gCCaGC-ACUUCCAGCG-GGUUAaCGCG- -5'
17111 5' -53.7 NC_004333.2 + 2597 1.13 0.000722
Target:  5'- gCGGUCGUGAAGGUCGCCCAAUUGCGCg -3'
miRNA:   3'- -GCCAGCACUUCCAGCGGGUUAACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.