miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17112 3' -57.2 NC_004333.2 + 35528 0.66 0.626463
Target:  5'- gGUGCCGacGUUGaCG---GUCACGACCGc -3'
miRNA:   3'- gCACGGC--CAGC-GCaagCAGUGCUGGC- -5'
17112 3' -57.2 NC_004333.2 + 2791 0.66 0.604979
Target:  5'- nGUGaagCGGUUGCGcagggcaUCGUaCGCGACCa -3'
miRNA:   3'- gCACg--GCCAGCGCa------AGCA-GUGCUGGc -5'
17112 3' -57.2 NC_004333.2 + 2912 0.66 0.603907
Target:  5'- aCGUGCugcgcagCGGUCGUGacCGUCaACGuGCCGc -3'
miRNA:   3'- -GCACG-------GCCAGCGCaaGCAG-UGC-UGGC- -5'
17112 3' -57.2 NC_004333.2 + 38364 0.67 0.583584
Target:  5'- gCGUGCaCGGUCGCG--CGUgCAuCGAUCu -3'
miRNA:   3'- -GCACG-GCCAGCGCaaGCA-GU-GCUGGc -5'
17112 3' -57.2 NC_004333.2 + 35268 0.67 0.583584
Target:  5'- uGUGCaGGUgGCGUUCGUa--GACgCGg -3'
miRNA:   3'- gCACGgCCAgCGCAAGCAgugCUG-GC- -5'
17112 3' -57.2 NC_004333.2 + 48181 0.67 0.572941
Target:  5'- -aUGCCGG-CGCGgugCG-CGCGcCCGg -3'
miRNA:   3'- gcACGGCCaGCGCaa-GCaGUGCuGGC- -5'
17112 3' -57.2 NC_004333.2 + 47135 0.67 0.556011
Target:  5'- --gGCCGGaugacaUCGCGUUCGUCcccgaugcgcaucugACG-CCGg -3'
miRNA:   3'- gcaCGGCC------AGCGCAAGCAG---------------UGCuGGC- -5'
17112 3' -57.2 NC_004333.2 + 18181 0.67 0.5518
Target:  5'- gCGUGCCGGgugaUGCGcUCGUCgugcgcGCGGCa- -3'
miRNA:   3'- -GCACGGCCa---GCGCaAGCAG------UGCUGgc -5'
17112 3' -57.2 NC_004333.2 + 3003 0.67 0.5518
Target:  5'- --cGCCGG-CGCGUcCGcCGCGACg- -3'
miRNA:   3'- gcaCGGCCaGCGCAaGCaGUGCUGgc -5'
17112 3' -57.2 NC_004333.2 + 43228 0.67 0.541317
Target:  5'- uCGUGCCG--UGCGUUCG-CAUGcCCGc -3'
miRNA:   3'- -GCACGGCcaGCGCAAGCaGUGCuGGC- -5'
17112 3' -57.2 NC_004333.2 + 22600 0.67 0.541317
Target:  5'- uCGUGuuGuucgcguccGUCGgGUUCGUCGCG-CCu -3'
miRNA:   3'- -GCACggC---------CAGCgCAAGCAGUGCuGGc -5'
17112 3' -57.2 NC_004333.2 + 19556 0.68 0.52056
Target:  5'- --cGCCGGUCGCacggUCGgCGCGGCa- -3'
miRNA:   3'- gcaCGGCCAGCGca--AGCaGUGCUGgc -5'
17112 3' -57.2 NC_004333.2 + 13952 0.68 0.52056
Target:  5'- cCGUGCCGGcCGacUUCG-CGCGGCgCGg -3'
miRNA:   3'- -GCACGGCCaGCgcAAGCaGUGCUG-GC- -5'
17112 3' -57.2 NC_004333.2 + 36196 0.68 0.52056
Target:  5'- --cGCCGGUCGCGcaggcCGUCGCcaACCu -3'
miRNA:   3'- gcaCGGCCAGCGCaa---GCAGUGc-UGGc -5'
17112 3' -57.2 NC_004333.2 + 30459 0.68 0.52056
Target:  5'- --cGCCGGUCGCuucgacGUUCGgcaUCGCGGUCGa -3'
miRNA:   3'- gcaCGGCCAGCG------CAAGC---AGUGCUGGC- -5'
17112 3' -57.2 NC_004333.2 + 41621 0.68 0.510298
Target:  5'- --aGCCGGUCGUGagCaUCGCGACg- -3'
miRNA:   3'- gcaCGGCCAGCGCaaGcAGUGCUGgc -5'
17112 3' -57.2 NC_004333.2 + 41227 0.68 0.499108
Target:  5'- uGUcGCCGGUCGUGUcgcCGUCGCugcgcuucccgcaGAUCGa -3'
miRNA:   3'- gCA-CGGCCAGCGCAa--GCAGUG-------------CUGGC- -5'
17112 3' -57.2 NC_004333.2 + 9057 0.68 0.480045
Target:  5'- cCGcGUCGGUCGCcgccgCG-CACGGCCGc -3'
miRNA:   3'- -GCaCGGCCAGCGcaa--GCaGUGCUGGC- -5'
17112 3' -57.2 NC_004333.2 + 31227 0.69 0.470156
Target:  5'- -aUGCCGGUCGCGa-CGgccgCGCGGCg- -3'
miRNA:   3'- gcACGGCCAGCGCaaGCa---GUGCUGgc -5'
17112 3' -57.2 NC_004333.2 + 25033 0.69 0.470156
Target:  5'- --cGCCGGaaUCGgguaGUUCGUCGCG-CCGu -3'
miRNA:   3'- gcaCGGCC--AGCg---CAAGCAGUGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.