miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17112 5' -57 NC_004333.2 + 6837 0.66 0.588602
Target:  5'- gGCGGGGCAcUCGUcgGCuaccgGCGGCUGCGc- -3'
miRNA:   3'- gCGUCCCGU-AGCA--UG-----CGCUGGUGCuu -5'
17112 5' -57 NC_004333.2 + 37118 0.66 0.563506
Target:  5'- uGCGGGGCGUgcucgaagcgcucaCGccgcacgACGCGAUCACGu- -3'
miRNA:   3'- gCGUCCCGUA--------------GCa------UGCGCUGGUGCuu -5'
17112 5' -57 NC_004333.2 + 20842 0.66 0.555922
Target:  5'- gCGCAGGcGUGUCGacguucagGCGCGcaGCCGCGu- -3'
miRNA:   3'- -GCGUCC-CGUAGCa-------UGCGC--UGGUGCuu -5'
17112 5' -57 NC_004333.2 + 37981 0.66 0.555922
Target:  5'- gGCAGuuuGGCGUCGccgagaGCGCGAaUCGCGAGc -3'
miRNA:   3'- gCGUC---CCGUAGCa-----UGCGCU-GGUGCUU- -5'
17112 5' -57 NC_004333.2 + 29258 0.66 0.545141
Target:  5'- uGCGcGGguUCGUGCaGCGGCC-CGAc -3'
miRNA:   3'- gCGUcCCguAGCAUG-CGCUGGuGCUu -5'
17112 5' -57 NC_004333.2 + 24290 0.67 0.482121
Target:  5'- uCGCccGGCGaC-UGCGCGACCugGAAc -3'
miRNA:   3'- -GCGucCCGUaGcAUGCGCUGGugCUU- -5'
17112 5' -57 NC_004333.2 + 10745 0.67 0.482121
Target:  5'- gGCGGcGUAUCGUaccGCGCGGCC-CGGc -3'
miRNA:   3'- gCGUCcCGUAGCA---UGCGCUGGuGCUu -5'
17112 5' -57 NC_004333.2 + 45190 0.68 0.471952
Target:  5'- gCGCAGcGGCAgcuGUucCGCG-CCACGAAg -3'
miRNA:   3'- -GCGUC-CCGUag-CAu-GCGCuGGUGCUU- -5'
17112 5' -57 NC_004333.2 + 4929 0.68 0.461893
Target:  5'- gGCAGcGGCAUCGgcacgGCGCGcGCgUACGGu -3'
miRNA:   3'- gCGUC-CCGUAGCa----UGCGC-UG-GUGCUu -5'
17112 5' -57 NC_004333.2 + 30380 0.68 0.451948
Target:  5'- gGCGGGugGUGUCGcagGCGCGACgGCGGc -3'
miRNA:   3'- gCGUCC--CGUAGCa--UGCGCUGgUGCUu -5'
17112 5' -57 NC_004333.2 + 41065 0.68 0.442122
Target:  5'- aGguGGGCuUCGU-CGaCGAgCACGAAg -3'
miRNA:   3'- gCguCCCGuAGCAuGC-GCUgGUGCUU- -5'
17112 5' -57 NC_004333.2 + 8978 0.68 0.442122
Target:  5'- uCGU-GGGC--CGUGCGCGGCgGCGAc -3'
miRNA:   3'- -GCGuCCCGuaGCAUGCGCUGgUGCUu -5'
17112 5' -57 NC_004333.2 + 31878 0.68 0.432417
Target:  5'- cCGCAGGGCAUC-UACcuCGAuuUCACGAu -3'
miRNA:   3'- -GCGUCCCGUAGcAUGc-GCU--GGUGCUu -5'
17112 5' -57 NC_004333.2 + 39267 0.69 0.413386
Target:  5'- gGCAGGcGCAcgCGcGCGCGAUCGCa-- -3'
miRNA:   3'- gCGUCC-CGUa-GCaUGCGCUGGUGcuu -5'
17112 5' -57 NC_004333.2 + 2110 0.69 0.404067
Target:  5'- uCGCGcGGGCGUCG-ACGUGAUCgauGCGGc -3'
miRNA:   3'- -GCGU-CCCGUAGCaUGCGCUGG---UGCUu -5'
17112 5' -57 NC_004333.2 + 47906 0.7 0.359518
Target:  5'- gGCGGGGC-UCuacUACGUGGCUGCGAu -3'
miRNA:   3'- gCGUCCCGuAGc--AUGCGCUGGUGCUu -5'
17112 5' -57 NC_004333.2 + 1194 0.7 0.342685
Target:  5'- gCGCAGcacGGCAccgacuUCGcGCGCGACUGCGAc -3'
miRNA:   3'- -GCGUC---CCGU------AGCaUGCGCUGGUGCUu -5'
17112 5' -57 NC_004333.2 + 2803 1.06 0.000869
Target:  5'- gCGCAGGGCAUCGUACGCGACCACGAAa -3'
miRNA:   3'- -GCGUCCCGUAGCAUGCGCUGGUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.