miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17113 5' -66 NC_004333.2 + 45578 0.66 0.218763
Target:  5'- gCGCCccGCCCGCCaguuguagaCGAucucgcUGACcuGCuCGGGCg -3'
miRNA:   3'- -GCGG--CGGGCGGg--------GCU------ACUG--CG-GCCCG- -5'
17113 5' -66 NC_004333.2 + 37186 0.67 0.215028
Target:  5'- aCGCCGCUcacgacgCGCgCCGGUgccgaguuccgccgcGACGCUGuGGCc -3'
miRNA:   3'- -GCGGCGG-------GCGgGGCUA---------------CUGCGGC-CCG- -5'
17113 5' -66 NC_004333.2 + 46066 0.67 0.213444
Target:  5'- uGCCaGCCCucgGCgCCGAgUGGCagGCCGGGa -3'
miRNA:   3'- gCGG-CGGG---CGgGGCU-ACUG--CGGCCCg -5'
17113 5' -66 NC_004333.2 + 6912 0.67 0.212918
Target:  5'- aGCCGCCgguagccgacgagUGCCCCGccggaGUGcCGCCGuugcgacaGGCg -3'
miRNA:   3'- gCGGCGG-------------GCGGGGC-----UACuGCGGC--------CCG- -5'
17113 5' -66 NC_004333.2 + 9032 0.67 0.208236
Target:  5'- cCGCacgauccaGCCCGCgCaCgCGAUGgacaGCGCCGGcGCg -3'
miRNA:   3'- -GCGg-------CGGGCG-G-G-GCUAC----UGCGGCC-CG- -5'
17113 5' -66 NC_004333.2 + 12379 0.67 0.203139
Target:  5'- gCGcCCGCCCgcGCCCCGcccggcgcgccaGUGuCGCCGccuucGGCc -3'
miRNA:   3'- -GC-GGCGGG--CGGGGC------------UACuGCGGC-----CCG- -5'
17113 5' -66 NC_004333.2 + 38708 0.67 0.203139
Target:  5'- uGCCGCCCGggCCGAUcaGAa--CGGGCa -3'
miRNA:   3'- gCGGCGGGCggGGCUA--CUgcgGCCCG- -5'
17113 5' -66 NC_004333.2 + 4722 0.67 0.202635
Target:  5'- gCGCCgGCCUGCCCgucgccaugaucgCGAUGGCGCUcaauuacGGUa -3'
miRNA:   3'- -GCGG-CGGGCGGG-------------GCUACUGCGGc------CCG- -5'
17113 5' -66 NC_004333.2 + 41710 0.67 0.19815
Target:  5'- cCGCaGCCCGCgCCCGAcaaucUGcCGCCaGaGCa -3'
miRNA:   3'- -GCGgCGGGCG-GGGCU-----ACuGCGGcC-CG- -5'
17113 5' -66 NC_004333.2 + 29976 0.67 0.19815
Target:  5'- gGCCGCgCUGCCaCCG---GCGCCGaGCg -3'
miRNA:   3'- gCGGCG-GGCGG-GGCuacUGCGGCcCG- -5'
17113 5' -66 NC_004333.2 + 9821 0.67 0.19815
Target:  5'- uGCCuGCCCGUCCgCGucgccUGAgCGCaugaCGGGCa -3'
miRNA:   3'- gCGG-CGGGCGGG-GCu----ACU-GCG----GCCCG- -5'
17113 5' -66 NC_004333.2 + 8736 0.67 0.19815
Target:  5'- aCGCCGacggcaCCGUCaCGAgcaaGCCGGGCg -3'
miRNA:   3'- -GCGGCg-----GGCGGgGCUacugCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 41394 0.67 0.19815
Target:  5'- uCGCgCGUCaCGUCCaucgcGCGCCGGGCg -3'
miRNA:   3'- -GCG-GCGG-GCGGGgcuacUGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 24211 0.67 0.193269
Target:  5'- gGCCGCCUgGCCgCCGuaaaacGGCGCUugcccccaGGGCu -3'
miRNA:   3'- gCGGCGGG-CGG-GGCua----CUGCGG--------CCCG- -5'
17113 5' -66 NC_004333.2 + 5446 0.67 0.188021
Target:  5'- aCGCCGgcuucaaCCCGaucgaCCCGAaGAauCCGGGCa -3'
miRNA:   3'- -GCGGC-------GGGCg----GGGCUaCUgcGGCCCG- -5'
17113 5' -66 NC_004333.2 + 3298 0.68 0.179252
Target:  5'- uGCUGCCCGgCgucaUCGggGcgggcggcGCGCCGGGCc -3'
miRNA:   3'- gCGGCGGGCgG----GGCuaC--------UGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 3995 0.68 0.179252
Target:  5'- uGCCggucgGCCUGCCgCCGcUGcCGCCuGGCg -3'
miRNA:   3'- gCGG-----CGGGCGG-GGCuACuGCGGcCCG- -5'
17113 5' -66 NC_004333.2 + 23018 0.68 0.1788
Target:  5'- aCGCCGCCCGCCugcacugCCGucaGCGUCuGGUu -3'
miRNA:   3'- -GCGGCGGGCGG-------GGCuacUGCGGcCCG- -5'
17113 5' -66 NC_004333.2 + 11985 0.68 0.174783
Target:  5'- gCGCgCGCgCCGCUgCGc--AUGCCGGGCc -3'
miRNA:   3'- -GCG-GCG-GGCGGgGCuacUGCGGCCCG- -5'
17113 5' -66 NC_004333.2 + 41832 0.68 0.174783
Target:  5'- aCGgCGCCCGgCCgCGA--GCgGUCGGGCa -3'
miRNA:   3'- -GCgGCGGGCgGG-GCUacUG-CGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.