miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17114 3' -55 NC_004333.2 + 15889 0.65 0.695872
Target:  5'- uGCGgaacGUGCGCagGCGUCG-GcGCGAUCg -3'
miRNA:   3'- -UGUau--CACGCGg-UGUAGCgC-CGCUAG- -5'
17114 3' -55 NC_004333.2 + 37160 0.65 0.695872
Target:  5'- ----cGUGCGgcaucCCGCAgCGCGGCGAc- -3'
miRNA:   3'- uguauCACGC-----GGUGUaGCGCCGCUag -5'
17114 3' -55 NC_004333.2 + 18879 0.66 0.689228
Target:  5'- cGCcgGG-GCGCCcagaacGCAUCgaaggccgccuguuuGUGGCGAUCg -3'
miRNA:   3'- -UGuaUCaCGCGG------UGUAG---------------CGCCGCUAG- -5'
17114 3' -55 NC_004333.2 + 6668 0.66 0.684787
Target:  5'- gGCGcUGGgcgGCGCgC-CGUgGCGGCGAUg -3'
miRNA:   3'- -UGU-AUCa--CGCG-GuGUAgCGCCGCUAg -5'
17114 3' -55 NC_004333.2 + 40938 0.66 0.684787
Target:  5'- uACcgAGUcGCGCgAcCAUCGCcGGCGAc- -3'
miRNA:   3'- -UGuaUCA-CGCGgU-GUAGCG-CCGCUag -5'
17114 3' -55 NC_004333.2 + 4909 0.66 0.682564
Target:  5'- -gAUAGUGCGCCgucgccauccaaaACAUCGCGccguacuGCG-UCu -3'
miRNA:   3'- ugUAUCACGCGG-------------UGUAGCGC-------CGCuAG- -5'
17114 3' -55 NC_004333.2 + 26066 0.66 0.673651
Target:  5'- ---cAGUgGCGCCGCA--GCGGCGGc- -3'
miRNA:   3'- uguaUCA-CGCGGUGUagCGCCGCUag -5'
17114 3' -55 NC_004333.2 + 28761 0.66 0.672535
Target:  5'- ------aGCGCCGCgucgaccgcgcggGUCGCGGCGGc- -3'
miRNA:   3'- uguaucaCGCGGUG-------------UAGCGCCGCUag -5'
17114 3' -55 NC_004333.2 + 27567 0.66 0.662473
Target:  5'- uACAUcaacCGCaCGCAauggaUCGCGGCGGUCg -3'
miRNA:   3'- -UGUAucacGCG-GUGU-----AGCGCCGCUAG- -5'
17114 3' -55 NC_004333.2 + 38799 0.66 0.651266
Target:  5'- gGCAUGGgGCGCCGCGagaCGGaggaGAUCa -3'
miRNA:   3'- -UGUAUCaCGCGGUGUagcGCCg---CUAG- -5'
17114 3' -55 NC_004333.2 + 20316 0.66 0.640041
Target:  5'- ----uGUGCGgCGCgauguaggccaGUCGCGGuCGAUCg -3'
miRNA:   3'- uguauCACGCgGUG-----------UAGCGCC-GCUAG- -5'
17114 3' -55 NC_004333.2 + 16605 0.67 0.628808
Target:  5'- gGCAgu-UGCGCCACcgcUCGCGGCc--- -3'
miRNA:   3'- -UGUaucACGCGGUGu--AGCGCCGcuag -5'
17114 3' -55 NC_004333.2 + 17521 0.67 0.628808
Target:  5'- cGCGU--UGCGCCACAUC-CGGUGc-- -3'
miRNA:   3'- -UGUAucACGCGGUGUAGcGCCGCuag -5'
17114 3' -55 NC_004333.2 + 43992 0.67 0.627685
Target:  5'- uACAUggguaucGGUGCGCUACGUgGCGuuUGGUCg -3'
miRNA:   3'- -UGUA-------UCACGCGGUGUAgCGCc-GCUAG- -5'
17114 3' -55 NC_004333.2 + 15546 0.67 0.617578
Target:  5'- gGCAUcGaGCaGCCcCAUCGUGGCGAg- -3'
miRNA:   3'- -UGUAuCaCG-CGGuGUAGCGCCGCUag -5'
17114 3' -55 NC_004333.2 + 32535 0.67 0.606361
Target:  5'- uACAUGcUGCGgCuCGUCGCGGCGc-- -3'
miRNA:   3'- -UGUAUcACGCgGuGUAGCGCCGCuag -5'
17114 3' -55 NC_004333.2 + 44376 0.67 0.595168
Target:  5'- gACA-GGUGCGCUGC-UCGgCGGCGcgUg -3'
miRNA:   3'- -UGUaUCACGCGGUGuAGC-GCCGCuaG- -5'
17114 3' -55 NC_004333.2 + 3907 0.67 0.584007
Target:  5'- uCGUGGUaGCGCCagGCGgcaGCGGCGGc- -3'
miRNA:   3'- uGUAUCA-CGCGG--UGUag-CGCCGCUag -5'
17114 3' -55 NC_004333.2 + 20383 0.67 0.584007
Target:  5'- gGCA-AGccugGCaaCCACGUCGCGGCGAg- -3'
miRNA:   3'- -UGUaUCa---CGc-GGUGUAGCGCCGCUag -5'
17114 3' -55 NC_004333.2 + 44936 0.68 0.572888
Target:  5'- gGCA-GGU-UGUCGCG-CGCGGCGAUCu -3'
miRNA:   3'- -UGUaUCAcGCGGUGUaGCGCCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.