miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17114 5' -62.1 NC_004333.2 + 11956 0.66 0.381394
Target:  5'- gCGGUCGaGCGCCUugcacGCGcgucgacgaucgcGGCCGUAucGCg -3'
miRNA:   3'- gGUCAGCcCGCGGA-----CGC-------------CCGGCAU--CG- -5'
17114 5' -62.1 NC_004333.2 + 46175 0.66 0.373782
Target:  5'- cCCAGaugUGGGCGaCCga-GGGCUG-GGCg -3'
miRNA:   3'- -GGUCa--GCCCGC-GGacgCCCGGCaUCG- -5'
17114 5' -62.1 NC_004333.2 + 45080 0.66 0.365446
Target:  5'- gCGGUCGaGCgGCCggacaGCGcGCCGUGGUa -3'
miRNA:   3'- gGUCAGCcCG-CGGa----CGCcCGGCAUCG- -5'
17114 5' -62.1 NC_004333.2 + 9464 0.66 0.357239
Target:  5'- aCCAGgcgCGGGUGCC-GCaccGCCGccgAGCu -3'
miRNA:   3'- -GGUCa--GCCCGCGGaCGcc-CGGCa--UCG- -5'
17114 5' -62.1 NC_004333.2 + 25652 0.66 0.349163
Target:  5'- gCGGUCGaaaGCGuCUUGCcGGCCGUcGCg -3'
miRNA:   3'- gGUCAGCc--CGC-GGACGcCCGGCAuCG- -5'
17114 5' -62.1 NC_004333.2 + 38567 0.66 0.341217
Target:  5'- aCguGUCGaGGCG-CUGCGuGCCGUcccauugcGGCa -3'
miRNA:   3'- -GguCAGC-CCGCgGACGCcCGGCA--------UCG- -5'
17114 5' -62.1 NC_004333.2 + 6691 0.66 0.336512
Target:  5'- uCgAGUUGauuaccugcgacugcGGCGCUggGCGGcgcGCCGUGGCg -3'
miRNA:   3'- -GgUCAGC---------------CCGCGGa-CGCC---CGGCAUCG- -5'
17114 5' -62.1 NC_004333.2 + 9831 0.67 0.325721
Target:  5'- uCCGcGUCGccugaGCGCaUGaCGGGCaCGUAGCg -3'
miRNA:   3'- -GGU-CAGCc----CGCGgAC-GCCCG-GCAUCG- -5'
17114 5' -62.1 NC_004333.2 + 21653 0.67 0.302747
Target:  5'- gCGGgCGGGCGUCgcguaaGCGuugcuguccagauGGCCGUAGUc -3'
miRNA:   3'- gGUCaGCCCGCGGa-----CGC-------------CCGGCAUCG- -5'
17114 5' -62.1 NC_004333.2 + 41979 0.67 0.292086
Target:  5'- gCCAGUgCGGGCGaccgcgccaaggcuuCCUGuCGGuGCgCGUgaAGCg -3'
miRNA:   3'- -GGUCA-GCCCGC---------------GGAC-GCC-CG-GCA--UCG- -5'
17114 5' -62.1 NC_004333.2 + 12449 0.67 0.289293
Target:  5'- gCCGGgcgGGGCGCggGCGGGCgcuaCGgcGCc -3'
miRNA:   3'- -GGUCag-CCCGCGgaCGCCCG----GCauCG- -5'
17114 5' -62.1 NC_004333.2 + 260 0.67 0.289293
Target:  5'- gCCGG-CGGGCGCa--CGGGCaGUGGa -3'
miRNA:   3'- -GGUCaGCCCGCGgacGCCCGgCAUCg -5'
17114 5' -62.1 NC_004333.2 + 45544 0.68 0.282403
Target:  5'- aCCuGcUCGGGCGgCagGUGGacGCCGUAGUu -3'
miRNA:   3'- -GGuC-AGCCCGCgGa-CGCC--CGGCAUCG- -5'
17114 5' -62.1 NC_004333.2 + 36931 0.68 0.269014
Target:  5'- gCAGUCuaucaaugugcuGGGUugauagcgGCCgGCGauGGCCGUAGCg -3'
miRNA:   3'- gGUCAG------------CCCG--------CGGaCGC--CCGGCAUCG- -5'
17114 5' -62.1 NC_004333.2 + 37107 0.68 0.269014
Target:  5'- --cGUCGGGCaG-CUGCGGGgCGU-GCu -3'
miRNA:   3'- gguCAGCCCG-CgGACGCCCgGCAuCG- -5'
17114 5' -62.1 NC_004333.2 + 41893 0.68 0.249897
Target:  5'- gCGGcCGGGCGCC-GuCGuGCCGUcgGGCa -3'
miRNA:   3'- gGUCaGCCCGCGGaC-GCcCGGCA--UCG- -5'
17114 5' -62.1 NC_004333.2 + 9709 0.68 0.249897
Target:  5'- aCAGcCGGGCGCagGCGcGCCGccGGCa -3'
miRNA:   3'- gGUCaGCCCGCGgaCGCcCGGCa-UCG- -5'
17114 5' -62.1 NC_004333.2 + 38107 0.69 0.231915
Target:  5'- uCCAgGUCgGGGCGCCagguaucgaaCGGGUCGgcGCa -3'
miRNA:   3'- -GGU-CAG-CCCGCGGac--------GCCCGGCauCG- -5'
17114 5' -62.1 NC_004333.2 + 31392 0.69 0.220542
Target:  5'- gCCGGcauugCGGGCGCCgUGCucGGcGUCGgcGCa -3'
miRNA:   3'- -GGUCa----GCCCGCGG-ACG--CC-CGGCauCG- -5'
17114 5' -62.1 NC_004333.2 + 13896 0.71 0.157733
Target:  5'- gCCGGcaCGGGCuGCgCgGCGGcuGCCGUGGCg -3'
miRNA:   3'- -GGUCa-GCCCG-CG-GaCGCC--CGGCAUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.