miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17115 3' -54.2 NC_004333.2 + 30477 0.66 0.769041
Target:  5'- cGCGCGAAU-UCG-GUCCGGCg---CCg -3'
miRNA:   3'- -UGUGCUUGuAGCaCGGGCCGaguaGG- -5'
17115 3' -54.2 NC_004333.2 + 39135 0.66 0.769041
Target:  5'- cGCACGAgucGCGcguacUCGccGUCCGGCUCAa-- -3'
miRNA:   3'- -UGUGCU---UGU-----AGCa-CGGGCCGAGUagg -5'
17115 3' -54.2 NC_004333.2 + 8924 0.66 0.769041
Target:  5'- uGCGCGAcgcgGCuUCGUucGCgCCGGCgcuGUCCa -3'
miRNA:   3'- -UGUGCU----UGuAGCA--CG-GGCCGag-UAGG- -5'
17115 3' -54.2 NC_004333.2 + 2105 0.66 0.769041
Target:  5'- uACGCGAGCAUCGccucgaaCUCGGCgCGUUg -3'
miRNA:   3'- -UGUGCUUGUAGCac-----GGGCCGaGUAGg -5'
17115 3' -54.2 NC_004333.2 + 22052 0.66 0.758716
Target:  5'- -gGCGGACAgaUCGUGCaCGGCgcgUAgcgCCa -3'
miRNA:   3'- ugUGCUUGU--AGCACGgGCCGa--GUa--GG- -5'
17115 3' -54.2 NC_004333.2 + 23483 0.66 0.758716
Target:  5'- -gGCGggUA-CGUGCCgGGCUa--CCa -3'
miRNA:   3'- ugUGCuuGUaGCACGGgCCGAguaGG- -5'
17115 3' -54.2 NC_004333.2 + 14510 0.66 0.758716
Target:  5'- -aGCGGACGagCGUGUgUGGCUgAUCg -3'
miRNA:   3'- ugUGCUUGUa-GCACGgGCCGAgUAGg -5'
17115 3' -54.2 NC_004333.2 + 1647 0.66 0.748258
Target:  5'- aGCAUGGGCAUCGacgGCacguugucggCCGGCUUcguGUUCa -3'
miRNA:   3'- -UGUGCUUGUAGCa--CG----------GGCCGAG---UAGG- -5'
17115 3' -54.2 NC_004333.2 + 12447 0.66 0.747206
Target:  5'- cACACcgucGAUAUCGUcgucggccggcacGCCCGGgUCGUCa -3'
miRNA:   3'- -UGUGc---UUGUAGCA-------------CGGGCCgAGUAGg -5'
17115 3' -54.2 NC_004333.2 + 13371 0.66 0.736615
Target:  5'- gGCACGAGCggCGUGUCCaugaucuGG-UCGUCg -3'
miRNA:   3'- -UGUGCUUGuaGCACGGG-------CCgAGUAGg -5'
17115 3' -54.2 NC_004333.2 + 38584 0.66 0.73128
Target:  5'- uCGCGGGCAUCGUgaagcgccagcuacaGCCgGGCgcg-CCg -3'
miRNA:   3'- uGUGCUUGUAGCA---------------CGGgCCGaguaGG- -5'
17115 3' -54.2 NC_004333.2 + 31116 0.66 0.726992
Target:  5'- gGCGCGAguugcugcucGCGcgCGaGCCCGGCgaaugCAUCg -3'
miRNA:   3'- -UGUGCU----------UGUa-GCaCGGGCCGa----GUAGg -5'
17115 3' -54.2 NC_004333.2 + 37272 0.66 0.716208
Target:  5'- cGCGCGGAacUCG-GCaCCGGCgcgCGUCg -3'
miRNA:   3'- -UGUGCUUguAGCaCG-GGCCGa--GUAGg -5'
17115 3' -54.2 NC_004333.2 + 45711 0.67 0.705338
Target:  5'- cGCACGccuGCAucUCGaGCCCGGCgcgaaCGUgCCg -3'
miRNA:   3'- -UGUGCu--UGU--AGCaCGGGCCGa----GUA-GG- -5'
17115 3' -54.2 NC_004333.2 + 29888 0.67 0.705338
Target:  5'- gGCGCGGcgaucaGCAUCaacgGCCCGGUgaccgUCGUCg -3'
miRNA:   3'- -UGUGCU------UGUAGca--CGGGCCG-----AGUAGg -5'
17115 3' -54.2 NC_004333.2 + 3279 0.67 0.705338
Target:  5'- -gGCGGGCGgcgCGccgGgCCGGCUCA-CCg -3'
miRNA:   3'- ugUGCUUGUa--GCa--CgGGCCGAGUaGG- -5'
17115 3' -54.2 NC_004333.2 + 23191 0.67 0.694395
Target:  5'- cGCGCGcAACAUCaGUGCCgCcGUUCAgCCg -3'
miRNA:   3'- -UGUGC-UUGUAG-CACGG-GcCGAGUaGG- -5'
17115 3' -54.2 NC_004333.2 + 2109 0.67 0.694395
Target:  5'- cGCGCGGGCGUCGacgugaucgaUGCggccgugacguCgGGCaUCAUCCg -3'
miRNA:   3'- -UGUGCUUGUAGC----------ACG-----------GgCCG-AGUAGG- -5'
17115 3' -54.2 NC_004333.2 + 11334 0.67 0.694395
Target:  5'- cGCGCGAugAaggCG-GCgCGGUUCGUCg -3'
miRNA:   3'- -UGUGCUugUa--GCaCGgGCCGAGUAGg -5'
17115 3' -54.2 NC_004333.2 + 31384 0.67 0.68339
Target:  5'- -uGCGGGCGcCGUGCUCGGCgUCGg-- -3'
miRNA:   3'- ugUGCUUGUaGCACGGGCCG-AGUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.