miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17115 5' -52.2 NC_004333.2 + 36148 0.66 0.862552
Target:  5'- -----aGCGCCGCGUcACGGgccagcucGUCGUa -3'
miRNA:   3'- cauuagCGCGGCGCA-UGCUa-------CAGCAc -5'
17115 5' -52.2 NC_004333.2 + 7936 0.66 0.862552
Target:  5'- ---uUCGCGCCGCuGU-CGccGUCGg- -3'
miRNA:   3'- cauuAGCGCGGCG-CAuGCuaCAGCac -5'
17115 5' -52.2 NC_004333.2 + 41062 0.66 0.854049
Target:  5'- ---uUCGCGCCGCcaauccgcacGUGCGGuuUGUUGg- -3'
miRNA:   3'- cauuAGCGCGGCG----------CAUGCU--ACAGCac -5'
17115 5' -52.2 NC_004333.2 + 1110 0.66 0.845301
Target:  5'- --cGUCGCaGUCGCGcGCGAaGUCGg- -3'
miRNA:   3'- cauUAGCG-CGGCGCaUGCUaCAGCac -5'
17115 5' -52.2 NC_004333.2 + 17608 0.66 0.844413
Target:  5'- -cGAUCGUugucaagacgccgGCCGCGccCGGUGcCGUGg -3'
miRNA:   3'- caUUAGCG-------------CGGCGCauGCUACaGCAC- -5'
17115 5' -52.2 NC_004333.2 + 8941 0.66 0.844413
Target:  5'- ---uUCGCGCCggcgcuguccaucGCGUGCGcgGgcuggaUCGUGg -3'
miRNA:   3'- cauuAGCGCGG-------------CGCAUGCuaC------AGCAC- -5'
17115 5' -52.2 NC_004333.2 + 35414 0.66 0.836318
Target:  5'- -aGAUUGUGCCGCcUGUGAUGUUGg- -3'
miRNA:   3'- caUUAGCGCGGCGcAUGCUACAGCac -5'
17115 5' -52.2 NC_004333.2 + 30236 0.67 0.817682
Target:  5'- ----aCGCGCCGCGcGCGAUca-GUGc -3'
miRNA:   3'- cauuaGCGCGGCGCaUGCUAcagCAC- -5'
17115 5' -52.2 NC_004333.2 + 2220 0.67 0.786195
Target:  5'- uGUAGUUGUucGCCGCGUucgcguacgcacCGAUGUaCGUGu -3'
miRNA:   3'- -CAUUAGCG--CGGCGCAu-----------GCUACA-GCAC- -5'
17115 5' -52.2 NC_004333.2 + 39600 0.67 0.778037
Target:  5'- --cAUCgGCGCCGCaacCGAUGUCGa- -3'
miRNA:   3'- cauUAG-CGCGGCGcauGCUACAGCac -5'
17115 5' -52.2 NC_004333.2 + 42091 0.68 0.767698
Target:  5'- --cGUCGUGCUGCGcgACGAgg-CGUGu -3'
miRNA:   3'- cauUAGCGCGGCGCa-UGCUacaGCAC- -5'
17115 5' -52.2 NC_004333.2 + 21921 0.68 0.757213
Target:  5'- uGUAGcgCGCGCCGCGUcGCGGUauUCGaUGg -3'
miRNA:   3'- -CAUUa-GCGCGGCGCA-UGCUAc-AGC-AC- -5'
17115 5' -52.2 NC_004333.2 + 10196 0.68 0.757213
Target:  5'- -cAGUCGCGCaCGCGcaUGCGGccGUCGg- -3'
miRNA:   3'- caUUAGCGCG-GCGC--AUGCUa-CAGCac -5'
17115 5' -52.2 NC_004333.2 + 6657 0.68 0.714046
Target:  5'- ----gCGCGCCGUGgcgGCGAUG-CGg- -3'
miRNA:   3'- cauuaGCGCGGCGCa--UGCUACaGCac -5'
17115 5' -52.2 NC_004333.2 + 32385 0.69 0.70301
Target:  5'- -----aGCGCCGCGUcgggguucuCGGUGUCGg- -3'
miRNA:   3'- cauuagCGCGGCGCAu--------GCUACAGCac -5'
17115 5' -52.2 NC_004333.2 + 12340 0.69 0.680733
Target:  5'- -----gGUGCCGUGUACGuUGUCGa- -3'
miRNA:   3'- cauuagCGCGGCGCAUGCuACAGCac -5'
17115 5' -52.2 NC_004333.2 + 28846 0.69 0.658261
Target:  5'- -aAGUCGCGCCGCcgcgacccGCGcgGUCGa- -3'
miRNA:   3'- caUUAGCGCGGCGca------UGCuaCAGCac -5'
17115 5' -52.2 NC_004333.2 + 13869 0.7 0.646981
Target:  5'- uUGAgCGCGCCGCGccgcGCGAaGUCGg- -3'
miRNA:   3'- cAUUaGCGCGGCGCa---UGCUaCAGCac -5'
17115 5' -52.2 NC_004333.2 + 20821 0.7 0.613097
Target:  5'- -gGcgCGCaGCCGCGUcgGCGAUGUCc-- -3'
miRNA:   3'- caUuaGCG-CGGCGCA--UGCUACAGcac -5'
17115 5' -52.2 NC_004333.2 + 39337 0.7 0.613097
Target:  5'- -cGAUCGCGCgCGCGUGCGccUGcCGg- -3'
miRNA:   3'- caUUAGCGCG-GCGCAUGCu-ACaGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.