miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17116 3' -52.7 NC_004333.2 + 4747 1.08 0.001552
Target:  5'- aGCACGCCAGCUUUCACCGACAUCGAAc -3'
miRNA:   3'- -CGUGCGGUCGAAAGUGGCUGUAGCUU- -5'
17116 3' -52.7 NC_004333.2 + 37794 0.82 0.106637
Target:  5'- gGCGCGgCAGCUU--GCCGACAUCGAGc -3'
miRNA:   3'- -CGUGCgGUCGAAagUGGCUGUAGCUU- -5'
17116 3' -52.7 NC_004333.2 + 27888 0.78 0.189274
Target:  5'- uGCACGCCGGCUggCuuCGugGUCGAc -3'
miRNA:   3'- -CGUGCGGUCGAaaGugGCugUAGCUu -5'
17116 3' -52.7 NC_004333.2 + 25384 0.75 0.291664
Target:  5'- cGUACGUCgcGGCagUCGCCGGCGUCGGc -3'
miRNA:   3'- -CGUGCGG--UCGaaAGUGGCUGUAGCUu -5'
17116 3' -52.7 NC_004333.2 + 5045 0.75 0.299325
Target:  5'- gGCG-GCCGGCUgUUgGCCGACGUCGGc -3'
miRNA:   3'- -CGUgCGGUCGA-AAgUGGCUGUAGCUu -5'
17116 3' -52.7 NC_004333.2 + 28922 0.74 0.357295
Target:  5'- aGCGCGCCGGCUacgaacgcaGCCGGCA-CGAu -3'
miRNA:   3'- -CGUGCGGUCGAaag------UGGCUGUaGCUu -5'
17116 3' -52.7 NC_004333.2 + 12400 0.71 0.484129
Target:  5'- gGCGCGCCAGUg-UCGCCGcCuUCGGc -3'
miRNA:   3'- -CGUGCGGUCGaaAGUGGCuGuAGCUu -5'
17116 3' -52.7 NC_004333.2 + 37948 0.71 0.494786
Target:  5'- aGCAgGCCgaAGCgcUCACCGGCcUCGGg -3'
miRNA:   3'- -CGUgCGG--UCGaaAGUGGCUGuAGCUu -5'
17116 3' -52.7 NC_004333.2 + 38450 0.71 0.494786
Target:  5'- uCACGCCGGCg--CAcCCGACAcgCGAc -3'
miRNA:   3'- cGUGCGGUCGaaaGU-GGCUGUa-GCUu -5'
17116 3' -52.7 NC_004333.2 + 15534 0.71 0.505548
Target:  5'- gGCACGCCaAGCg--CGCCGA--UCGAc -3'
miRNA:   3'- -CGUGCGG-UCGaaaGUGGCUguAGCUu -5'
17116 3' -52.7 NC_004333.2 + 11836 0.71 0.51641
Target:  5'- cGCGCuCCAGCUUgCGCCGguACAUCGc- -3'
miRNA:   3'- -CGUGcGGUCGAAaGUGGC--UGUAGCuu -5'
17116 3' -52.7 NC_004333.2 + 17047 0.7 0.527364
Target:  5'- uGCGCGUucgguuucuCGGCUg-UACCGACGUCGAc -3'
miRNA:   3'- -CGUGCG---------GUCGAaaGUGGCUGUAGCUu -5'
17116 3' -52.7 NC_004333.2 + 4725 0.7 0.527364
Target:  5'- cGCGCGCCGGCcugcccgUCGCCauGAUcgCGAu -3'
miRNA:   3'- -CGUGCGGUCGaa-----AGUGG--CUGuaGCUu -5'
17116 3' -52.7 NC_004333.2 + 47246 0.7 0.549521
Target:  5'- uGCGCGgCAGCgcgUUCuuCCGGCGUCa-- -3'
miRNA:   3'- -CGUGCgGUCGa--AAGu-GGCUGUAGcuu -5'
17116 3' -52.7 NC_004333.2 + 2691 0.7 0.560709
Target:  5'- uCGCGCCGGCggcgGCCGACAggcCGAu -3'
miRNA:   3'- cGUGCGGUCGaaagUGGCUGUa--GCUu -5'
17116 3' -52.7 NC_004333.2 + 3272 0.7 0.571958
Target:  5'- gGCGCGCCgGGCcggcUCACCGGCcUCGu- -3'
miRNA:   3'- -CGUGCGG-UCGaa--AGUGGCUGuAGCuu -5'
17116 3' -52.7 NC_004333.2 + 29971 0.7 0.583261
Target:  5'- aGCGCgGCCGcGCUgcCACCGGCGcCGAGc -3'
miRNA:   3'- -CGUG-CGGU-CGAaaGUGGCUGUaGCUU- -5'
17116 3' -52.7 NC_004333.2 + 5137 0.69 0.594607
Target:  5'- -gACGCuguuCAGCgccgCGCCGACGUCGGc -3'
miRNA:   3'- cgUGCG----GUCGaaa-GUGGCUGUAGCUu -5'
17116 3' -52.7 NC_004333.2 + 28530 0.69 0.605987
Target:  5'- uGCGCGCCGacgcguGCaUUC-CCGGCAUCGc- -3'
miRNA:   3'- -CGUGCGGU------CGaAAGuGGCUGUAGCuu -5'
17116 3' -52.7 NC_004333.2 + 31397 0.69 0.617392
Target:  5'- aGCugGCCGGCaUUgcgggCGCCGugcucgGCGUCGGc -3'
miRNA:   3'- -CGugCGGUCG-AAa----GUGGC------UGUAGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.