Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17116 | 5' | -59.8 | NC_004333.2 | + | 47810 | 0.66 | 0.482062 |
Target: 5'- --gUCGGcCGGGGUGuacgaGGCCacgGCG-CGCg -3' miRNA: 3'- ggaAGCC-GUCCCAC-----UCGGg--CGCaGCG- -5' |
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17116 | 5' | -59.8 | NC_004333.2 | + | 1887 | 0.66 | 0.471255 |
Target: 5'- cCCggaUUGGCGGGGUcgccGAucaggaaguaccaGCCaCGCGUCuGCa -3' miRNA: 3'- -GGa--AGCCGUCCCA----CU-------------CGG-GCGCAG-CG- -5' |
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17116 | 5' | -59.8 | NC_004333.2 | + | 39371 | 0.66 | 0.461538 |
Target: 5'- --aUCGGCugccagccccGGGUGAGCagccaacCUGCGaUCGCg -3' miRNA: 3'- ggaAGCCGu---------CCCACUCG-------GGCGC-AGCG- -5' |
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17116 | 5' | -59.8 | NC_004333.2 | + | 32388 | 0.67 | 0.433976 |
Target: 5'- gCCgcgUCGGgGuucucGGUGucGGCCCGCGccUCGCg -3' miRNA: 3'- -GGa--AGCCgUc----CCAC--UCGGGCGC--AGCG- -5' |
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17116 | 5' | -59.8 | NC_004333.2 | + | 7382 | 0.67 | 0.433043 |
Target: 5'- --gUCGGCAGGcacguggggugccGUGAucuuccGCCCGUucgccGUCGCg -3' miRNA: 3'- ggaAGCCGUCC-------------CACU------CGGGCG-----CAGCG- -5' |
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17116 | 5' | -59.8 | NC_004333.2 | + | 8219 | 0.67 | 0.415534 |
Target: 5'- gCUgcgCGGCAGGaUGAcgccgGCCCGCG-CGa -3' miRNA: 3'- gGAa--GCCGUCCcACU-----CGGGCGCaGCg -5' |
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17116 | 5' | -59.8 | NC_004333.2 | + | 22952 | 0.67 | 0.415534 |
Target: 5'- aCCUUCGGCAaGcUGuucgccGCCggcaGCGUCGCg -3' miRNA: 3'- -GGAAGCCGUcCcACu-----CGGg---CGCAGCG- -5' |
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17116 | 5' | -59.8 | NC_004333.2 | + | 4783 | 1.13 | 0.000185 |
Target: 5'- uCCUUCGGCAGGGUGAGCCCGCGUCGCg -3' miRNA: 3'- -GGAAGCCGUCCCACUCGGGCGCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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