miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17117 3' -51.7 NC_004333.2 + 426 0.66 0.871767
Target:  5'- aGCUGUUCAAAGCGccgacgggcauuUCGgGCgGUACg -3'
miRNA:   3'- gCGGUAGGUUUUGU------------AGCgCGgCAUGa -5'
17117 3' -51.7 NC_004333.2 + 22440 0.66 0.871767
Target:  5'- gGCCAUCCucGGCG-CGUGCgGcGCa -3'
miRNA:   3'- gCGGUAGGuuUUGUaGCGCGgCaUGa -5'
17117 3' -51.7 NC_004333.2 + 30776 0.66 0.871767
Target:  5'- uGCCAgcuUCCAGGACGaagUUGCcGCCGccgGCg -3'
miRNA:   3'- gCGGU---AGGUUUUGU---AGCG-CGGCa--UGa -5'
17117 3' -51.7 NC_004333.2 + 12515 0.66 0.871767
Target:  5'- gGCCGUCCGGcuCGguguucaggCGUGCCGcUACc -3'
miRNA:   3'- gCGGUAGGUUuuGUa--------GCGCGGC-AUGa -5'
17117 3' -51.7 NC_004333.2 + 13623 0.66 0.871767
Target:  5'- uCGUCGg-CGAGcacuucguGCAUCGCGCgGUACUc -3'
miRNA:   3'- -GCGGUagGUUU--------UGUAGCGCGgCAUGA- -5'
17117 3' -51.7 NC_004333.2 + 5592 0.66 0.863475
Target:  5'- gGCCAUCgG--GCAUgCGCacguucagGCCGUGCg -3'
miRNA:   3'- gCGGUAGgUuuUGUA-GCG--------CGGCAUGa -5'
17117 3' -51.7 NC_004333.2 + 28083 0.66 0.863475
Target:  5'- gCGCgAUCUGGuuCAUCGUGUCGaGCg -3'
miRNA:   3'- -GCGgUAGGUUuuGUAGCGCGGCaUGa -5'
17117 3' -51.7 NC_004333.2 + 1666 0.66 0.863475
Target:  5'- gCGCgGUCgGAAACAgCGCuuccGUCGUGCa -3'
miRNA:   3'- -GCGgUAGgUUUUGUaGCG----CGGCAUGa -5'
17117 3' -51.7 NC_004333.2 + 4845 0.66 0.863475
Target:  5'- gGCUGaCCGuacGCG-CGCGCCGUGCc -3'
miRNA:   3'- gCGGUaGGUuu-UGUaGCGCGGCAUGa -5'
17117 3' -51.7 NC_004333.2 + 42141 0.66 0.863475
Target:  5'- aCGCUAUCCu---CGUCGUGaaucuCGUACg -3'
miRNA:   3'- -GCGGUAGGuuuuGUAGCGCg----GCAUGa -5'
17117 3' -51.7 NC_004333.2 + 27805 0.66 0.863475
Target:  5'- gGCCGaCCAGAu--UCGCGCCGc--- -3'
miRNA:   3'- gCGGUaGGUUUuguAGCGCGGCauga -5'
17117 3' -51.7 NC_004333.2 + 4301 0.66 0.862632
Target:  5'- gGCuCAUCCGGGuucaccuGCGuaaUCGCGCCGcgUACg -3'
miRNA:   3'- gCG-GUAGGUUU-------UGU---AGCGCGGC--AUGa -5'
17117 3' -51.7 NC_004333.2 + 3142 0.66 0.858375
Target:  5'- uCGCCGacgcuuacuuUCC-GGGCAUCGUcaacggcggccagcuGCCGUACg -3'
miRNA:   3'- -GCGGU----------AGGuUUUGUAGCG---------------CGGCAUGa -5'
17117 3' -51.7 NC_004333.2 + 3289 0.66 0.854925
Target:  5'- gCGUCAUCgGggcGGGCggCGCGCCGggccgGCUc -3'
miRNA:   3'- -GCGGUAGgU---UUUGuaGCGCGGCa----UGA- -5'
17117 3' -51.7 NC_004333.2 + 7784 0.66 0.854925
Target:  5'- aGCCGUUCAGGAacuUCGCcagGCCGaGCg -3'
miRNA:   3'- gCGGUAGGUUUUgu-AGCG---CGGCaUGa -5'
17117 3' -51.7 NC_004333.2 + 2998 0.66 0.854925
Target:  5'- aCGCUcgCCGGcGCGUC-CGCCGcgACg -3'
miRNA:   3'- -GCGGuaGGUUuUGUAGcGCGGCa-UGa -5'
17117 3' -51.7 NC_004333.2 + 28408 0.66 0.854925
Target:  5'- cCGCCGcaaUCgCAAcgUGUCGCGCCGg--- -3'
miRNA:   3'- -GCGGU---AG-GUUuuGUAGCGCGGCauga -5'
17117 3' -51.7 NC_004333.2 + 5136 0.66 0.854925
Target:  5'- aCGCUGUUCA--GCGcCGCGCCG-ACg -3'
miRNA:   3'- -GCGGUAGGUuuUGUaGCGCGGCaUGa -5'
17117 3' -51.7 NC_004333.2 + 26871 0.66 0.854925
Target:  5'- gGCCGUCgGcAACGaagCGCGCC-UACUc -3'
miRNA:   3'- gCGGUAGgUuUUGUa--GCGCGGcAUGA- -5'
17117 3' -51.7 NC_004333.2 + 15604 0.66 0.854056
Target:  5'- uGCuCGUCgGucacgguuucggcGAACGUCGUGCCGUugGCg -3'
miRNA:   3'- gCG-GUAGgU-------------UUUGUAGCGCGGCA--UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.