miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17117 5' -59.2 NC_004333.2 + 24364 0.66 0.431232
Target:  5'- uGUuCCAGGucGCGCAGUcGCCGGGCg-- -3'
miRNA:   3'- -CAuGGUCC--CGCGUUAcCGGCUCGgaa -5'
17117 5' -59.2 NC_004333.2 + 46068 0.66 0.412153
Target:  5'- cGUGCCAGcccucGGCGCcgAGUGGCa-GGCCg- -3'
miRNA:   3'- -CAUGGUC-----CCGCG--UUACCGgcUCGGaa -5'
17117 5' -59.2 NC_004333.2 + 20680 0.67 0.36682
Target:  5'- -gGCCcGacuGCGCGA-GGCCGAGCCg- -3'
miRNA:   3'- caUGGuCc--CGCGUUaCCGGCUCGGaa -5'
17117 5' -59.2 NC_004333.2 + 30804 0.67 0.36682
Target:  5'- aGUACCucGGCGaCGccacGGCCGAGCUUg -3'
miRNA:   3'- -CAUGGucCCGC-GUua--CCGGCUCGGAa -5'
17117 5' -59.2 NC_004333.2 + 43270 0.67 0.349673
Target:  5'- -gACgGGGGCGCAAgggGcGCCGAucccgGCCg- -3'
miRNA:   3'- caUGgUCCCGCGUUa--C-CGGCU-----CGGaa -5'
17117 5' -59.2 NC_004333.2 + 3285 0.67 0.333105
Target:  5'- -cAUCGGGGCGgGcgGcgcGCCGGGCCg- -3'
miRNA:   3'- caUGGUCCCGCgUuaC---CGGCUCGGaa -5'
17117 5' -59.2 NC_004333.2 + 983 0.68 0.309346
Target:  5'- cUACgAGGGCGCAAUG-CCGA-CCa- -3'
miRNA:   3'- cAUGgUCCCGCGUUACcGGCUcGGaa -5'
17117 5' -59.2 NC_004333.2 + 9682 0.69 0.252376
Target:  5'- -aGCCGGuGCGCAAccGGCCGAuGCCg- -3'
miRNA:   3'- caUGGUCcCGCGUUa-CCGGCU-CGGaa -5'
17117 5' -59.2 NC_004333.2 + 6814 0.69 0.252376
Target:  5'- -gACCGGGGCGCcGUGGCgcucgaauUGAGCa-- -3'
miRNA:   3'- caUGGUCCCGCGuUACCG--------GCUCGgaa -5'
17117 5' -59.2 NC_004333.2 + 12873 0.71 0.204327
Target:  5'- -gGCCuGGGCcuGCAGUGcGUCGAGCCc- -3'
miRNA:   3'- caUGGuCCCG--CGUUAC-CGGCUCGGaa -5'
17117 5' -59.2 NC_004333.2 + 20394 0.72 0.17368
Target:  5'- -gGCCGuGGcCGCAGUGGCCGcGCCg- -3'
miRNA:   3'- caUGGUcCC-GCGUUACCGGCuCGGaa -5'
17117 5' -59.2 NC_004333.2 + 27383 0.72 0.15559
Target:  5'- aGUGCCc-GGCGCGAcGGCCGuGCCg- -3'
miRNA:   3'- -CAUGGucCCGCGUUaCCGGCuCGGaa -5'
17117 5' -59.2 NC_004333.2 + 6699 0.73 0.135384
Target:  5'- cGUG-CGGGGCGCAuUGGCgaCGAGCCa- -3'
miRNA:   3'- -CAUgGUCCCGCGUuACCG--GCUCGGaa -5'
17117 5' -59.2 NC_004333.2 + 4957 1.05 0.00049
Target:  5'- uGUACCAGGGCGCAAUGGCCGAGCCUUg -3'
miRNA:   3'- -CAUGGUCCCGCGUUACCGGCUCGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.