Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 6603 | 0.66 | 0.884137 |
|
Target: 5'- cGGcgCGCcgCCCAGcgCCgcagUCGCaGGu -3' miRNA: 3'- aCUuaGCGuaGGGUUa-GGa---AGCGcCC- -5' |
|||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 12296 | 0.66 | 0.863263 |
|
Target: 5'- cGGcgCGCAUUgCGgcGUCCUgcgcgccagccucgCGCGGGu -3' miRNA: 3'- aCUuaGCGUAGgGU--UAGGAa-------------GCGCCC- -5' |
|||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 2390 | 0.66 | 0.859895 |
|
Target: 5'- ---cUCGCAUUCCGccaGUUCaaCGCGGGc -3' miRNA: 3'- acuuAGCGUAGGGU---UAGGaaGCGCCC- -5' |
|||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 24391 | 0.66 | 0.859895 |
|
Target: 5'- gGGggCGCAUUCuCGGUCggUCGCGGc -3' miRNA: 3'- aCUuaGCGUAGG-GUUAGgaAGCGCCc -5' |
|||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 18679 | 0.68 | 0.784905 |
|
Target: 5'- aGggUUGCcgCCCGcgCCUgccgCGCcGGu -3' miRNA: 3'- aCuuAGCGuaGGGUuaGGAa---GCGcCC- -5' |
|||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 36368 | 0.68 | 0.753706 |
|
Target: 5'- -cGGUCGUgauAUCCCAGg---UCGCGGGa -3' miRNA: 3'- acUUAGCG---UAGGGUUaggaAGCGCCC- -5' |
|||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 18736 | 0.69 | 0.710332 |
|
Target: 5'- --uAUCaGCGUCCCAaucGUCUUUCGaUGGGu -3' miRNA: 3'- acuUAG-CGUAGGGU---UAGGAAGC-GCCC- -5' |
|||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 28570 | 0.7 | 0.654377 |
|
Target: 5'- cGAAUCGcCAUCaguCGAUCauguaUCGCGGGu -3' miRNA: 3'- aCUUAGC-GUAGg--GUUAGga---AGCGCCC- -5' |
|||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 37299 | 0.73 | 0.488174 |
|
Target: 5'- cGAAggcgaCGCGUUCCAGUCggUCGCGGcGg -3' miRNA: 3'- aCUUa----GCGUAGGGUUAGgaAGCGCC-C- -5' |
|||||||
| 17119 | 3' | -51.8 | NC_004333.2 | + | 5500 | 1.12 | 0.0013 |
|
Target: 5'- cUGAAUCGCAUCCCAAUCCUUCGCGGGg -3' miRNA: 3'- -ACUUAGCGUAGGGUUAGGAAGCGCCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home