miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17119 5' -60.9 NC_004333.2 + 31352 0.66 0.431632
Target:  5'- cGGCCGGUcucGcCGGCaUGGUGCu--UGCa -3'
miRNA:   3'- -CCGGCCG---CuGCCGaACCGCGcucACG- -5'
17119 5' -60.9 NC_004333.2 + 13147 0.66 0.431632
Target:  5'- uGCCGGCGAacgaauacguCGGCUugagcaUgucgccgacugGGCGCGAuacgaucguGUGCa -3'
miRNA:   3'- cCGGCCGCU----------GCCGA------A-----------CCGCGCU---------CACG- -5'
17119 5' -60.9 NC_004333.2 + 1369 0.66 0.428851
Target:  5'- uGCCGGCGGCGGcCUUGaacgaacgcaugaaGCcGCGcuUGUa -3'
miRNA:   3'- cCGGCCGCUGCC-GAAC--------------CG-CGCucACG- -5'
17119 5' -60.9 NC_004333.2 + 46181 0.66 0.422406
Target:  5'- uGUgGGCGACcgagGGCUgGGCGCGucucGCg -3'
miRNA:   3'- cCGgCCGCUG----CCGAaCCGCGCuca-CG- -5'
17119 5' -60.9 NC_004333.2 + 25114 0.66 0.422406
Target:  5'- gGGCaCGGCGAgcaCGGC--GGCGCGcacGUucGCg -3'
miRNA:   3'- -CCG-GCCGCU---GCCGaaCCGCGCu--CA--CG- -5'
17119 5' -60.9 NC_004333.2 + 42096 0.66 0.422406
Target:  5'- uGCUGcGCGACgaGGCgUGuCGCGAGgUGCg -3'
miRNA:   3'- cCGGC-CGCUG--CCGaACcGCGCUC-ACG- -5'
17119 5' -60.9 NC_004333.2 + 5708 0.66 0.422406
Target:  5'- -aCCGGUaACGGCaUGGUGCGcGUuGCc -3'
miRNA:   3'- ccGGCCGcUGCCGaACCGCGCuCA-CG- -5'
17119 5' -60.9 NC_004333.2 + 48180 0.66 0.422406
Target:  5'- uGCCGGCG-CGGUgc-GCGCGcccGGUuGCc -3'
miRNA:   3'- cCGGCCGCuGCCGaacCGCGC---UCA-CG- -5'
17119 5' -60.9 NC_004333.2 + 18862 0.66 0.419661
Target:  5'- cGGCCGcGCGauaagcGCGGUUcagcgaUGGCGgGAaggggagccgcaacGUGCg -3'
miRNA:   3'- -CCGGC-CGC------UGCCGA------ACCGCgCU--------------CACG- -5'
17119 5' -60.9 NC_004333.2 + 11224 0.66 0.4133
Target:  5'- -uCgGGCG-CGGCUccuugccGGCGCucGAGUGCu -3'
miRNA:   3'- ccGgCCGCuGCCGAa------CCGCG--CUCACG- -5'
17119 5' -60.9 NC_004333.2 + 23725 0.66 0.409691
Target:  5'- aGGCCGGCGGCguuccgccucaaGGCgaggacuucaacGGCGCGuugaaccaGGUcGCg -3'
miRNA:   3'- -CCGGCCGCUG------------CCGaa----------CCGCGC--------UCA-CG- -5'
17119 5' -60.9 NC_004333.2 + 18554 0.66 0.409691
Target:  5'- uGCCGGCaACGGCggguacgccuccGGUGcCGGGUuGCg -3'
miRNA:   3'- cCGGCCGcUGCCGaa----------CCGC-GCUCA-CG- -5'
17119 5' -60.9 NC_004333.2 + 156 0.66 0.404316
Target:  5'- cGGCgCGaGCacacGAuCGGCgccUGGCGCGAGUcCa -3'
miRNA:   3'- -CCG-GC-CG----CU-GCCGa--ACCGCGCUCAcG- -5'
17119 5' -60.9 NC_004333.2 + 46416 0.66 0.404316
Target:  5'- gGGCUGGauCGaAUGGaagGGCGgCGAGUGUc -3'
miRNA:   3'- -CCGGCC--GC-UGCCgaaCCGC-GCUCACG- -5'
17119 5' -60.9 NC_004333.2 + 44430 0.66 0.404316
Target:  5'- uGGCUGGUG-CGuGCgaGGCGCucggccugccGGUGCa -3'
miRNA:   3'- -CCGGCCGCuGC-CGaaCCGCGc---------UCACG- -5'
17119 5' -60.9 NC_004333.2 + 11710 0.66 0.404316
Target:  5'- cGCCgGGCGGCGuGC-UGGCGUcc-UGCg -3'
miRNA:   3'- cCGG-CCGCUGC-CGaACCGCGcucACG- -5'
17119 5' -60.9 NC_004333.2 + 25368 0.66 0.404316
Target:  5'- cGCCGGCGuCGGCccGGuUGCGAc-GCc -3'
miRNA:   3'- cCGGCCGCuGCCGaaCC-GCGCUcaCG- -5'
17119 5' -60.9 NC_004333.2 + 41610 0.66 0.398985
Target:  5'- cGGCCcacGCGcucgcucgugcucugGCGGCagauugucgGGCGCGGGcUGCg -3'
miRNA:   3'- -CCGGc--CGC---------------UGCCGaa-------CCGCGCUC-ACG- -5'
17119 5' -60.9 NC_004333.2 + 33501 0.66 0.395456
Target:  5'- uGCCGGacucGCGGCUacgguucGGCGCGcAGUcGCu -3'
miRNA:   3'- cCGGCCgc--UGCCGAa------CCGCGC-UCA-CG- -5'
17119 5' -60.9 NC_004333.2 + 43033 0.66 0.395456
Target:  5'- cGCCGGCGAg-----GGUGCGGGUuGCa -3'
miRNA:   3'- cCGGCCGCUgccgaaCCGCGCUCA-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.