miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17119 5' -60.9 NC_004333.2 + 5543 1.13 0.000133
Target:  5'- uGGCCGGCGACGGCUUGGCGCGAGUGCa -3'
miRNA:   3'- -CCGGCCGCUGCCGAACCGCGCUCACG- -5'
17119 5' -60.9 NC_004333.2 + 25425 0.7 0.222324
Target:  5'- uGCCGGCGGCGGCcgucacgccgGGCGUGccGGUu- -3'
miRNA:   3'- cCGGCCGCUGCCGaa--------CCGCGC--UCAcg -5'
17119 5' -60.9 NC_004333.2 + 22865 0.7 0.22804
Target:  5'- cGGcCCGGCGAuCGGCgcgaucguacUGGCGCucGUGa -3'
miRNA:   3'- -CC-GGCCGCU-GCCGa---------ACCGCGcuCACg -5'
17119 5' -60.9 NC_004333.2 + 13147 0.66 0.431632
Target:  5'- uGCCGGCGAacgaauacguCGGCUugagcaUgucgccgacugGGCGCGAuacgaucguGUGCa -3'
miRNA:   3'- cCGGCCGCU----------GCCGA------A-----------CCGCGCU---------CACG- -5'
17119 5' -60.9 NC_004333.2 + 36121 0.75 0.097519
Target:  5'- aGGuuGGCGACGGCcu-GCGCGAccgGCg -3'
miRNA:   3'- -CCggCCGCUGCCGaacCGCGCUca-CG- -5'
17119 5' -60.9 NC_004333.2 + 20959 0.74 0.114892
Target:  5'- gGGCCGGaCGcaaacgcgcGCGGCgcgGGCGaguGGGUGCg -3'
miRNA:   3'- -CCGGCC-GC---------UGCCGaa-CCGCg--CUCACG- -5'
17119 5' -60.9 NC_004333.2 + 18603 0.74 0.128038
Target:  5'- -aCCGGCG-CGGCa-GGCGCGGGcgGCa -3'
miRNA:   3'- ccGGCCGCuGCCGaaCCGCGCUCa-CG- -5'
17119 5' -60.9 NC_004333.2 + 37407 0.73 0.142563
Target:  5'- cGUCGGCGcucGCGGUUU-GCGCGGcGUGCa -3'
miRNA:   3'- cCGGCCGC---UGCCGAAcCGCGCU-CACG- -5'
17119 5' -60.9 NC_004333.2 + 45429 0.72 0.171643
Target:  5'- cGGCggCGGCGACGGCgcauuCGCGAGcaugGCg -3'
miRNA:   3'- -CCG--GCCGCUGCCGaacc-GCGCUCa---CG- -5'
17119 5' -60.9 NC_004333.2 + 14690 0.7 0.216731
Target:  5'- cGGCCGaGUG-CaGGUgUGGCaCGAGUGCg -3'
miRNA:   3'- -CCGGC-CGCuG-CCGaACCGcGCUCACG- -5'
17119 5' -60.9 NC_004333.2 + 19941 0.72 0.176206
Target:  5'- cGCCgGGCGGCGaGCcgc-CGCGAGUGCu -3'
miRNA:   3'- cCGG-CCGCUGC-CGaaccGCGCUCACG- -5'
17119 5' -60.9 NC_004333.2 + 30613 0.72 0.15402
Target:  5'- aGGCCGGacgccaGgucgugcagcagcGCGGCaaGGCGCGGcGUGCg -3'
miRNA:   3'- -CCGGCCg-----C-------------UGCCGaaCCGCGCU-CACG- -5'
17119 5' -60.9 NC_004333.2 + 13951 0.79 0.053466
Target:  5'- uGGCCgccuuggcgacuucaGGCGGCGGCcggUGcGCGCGAGcUGCg -3'
miRNA:   3'- -CCGG---------------CCGCUGCCGa--AC-CGCGCUC-ACG- -5'
17119 5' -60.9 NC_004333.2 + 20882 0.71 0.185658
Target:  5'- uGGgCGGCGACGaGCccGGCGCagcgcGUGCu -3'
miRNA:   3'- -CCgGCCGCUGC-CGaaCCGCGcu---CACG- -5'
17119 5' -60.9 NC_004333.2 + 23694 0.76 0.082421
Target:  5'- uGGCCGGCGGaaaaccgagcgauUGGCUc-GCGCGAGUuGCg -3'
miRNA:   3'- -CCGGCCGCU-------------GCCGAacCGCGCUCA-CG- -5'
17119 5' -60.9 NC_004333.2 + 3199 0.73 0.150378
Target:  5'- aGGCCGGUGAgcCGGCccGGCGCGcc-GCc -3'
miRNA:   3'- -CCGGCCGCU--GCCGaaCCGCGCucaCG- -5'
17119 5' -60.9 NC_004333.2 + 13904 0.7 0.21126
Target:  5'- gGGCUGcGCGGCGGCUgccgUGGCGaucGUGg -3'
miRNA:   3'- -CCGGC-CGCUGCCGA----ACCGCgcuCACg -5'
17119 5' -60.9 NC_004333.2 + 2694 0.7 0.222324
Target:  5'- cGCCGGCGGCGGCcgacaGGCcgaucucgucgGCGAaguuguucGUGCc -3'
miRNA:   3'- cCGGCCGCUGCCGaa---CCG-----------CGCU--------CACG- -5'
17119 5' -60.9 NC_004333.2 + 22185 0.76 0.084968
Target:  5'- cGGCCGGCGGCGGUUcGGCggcuGCGGccUGCu -3'
miRNA:   3'- -CCGGCCGCUGCCGAaCCG----CGCUc-ACG- -5'
17119 5' -60.9 NC_004333.2 + 19827 0.74 0.121299
Target:  5'- uGCCGGCccgaucccuGCguauccuguccuGGCUucUGGCGCGAGUGCg -3'
miRNA:   3'- cCGGCCGc--------UG------------CCGA--ACCGCGCUCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.